PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927283.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 168aa    MW: 18968.2 Da    PI: 7.4594
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927283.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.64.8e-39171171101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaC++lrr+Ca dC+l+pyfpa++p++fa+vhk+FGasnv+++l++lp ++r +a++++ +eA +r++dPvyG+vg+i+ lq+++   ++ela
  XP_010927283.1  17 RCAACRYLRRRCAGDCILSPYFPASNPQRFACVHKIFGASNVTRMLQQLPVQQRAQAADAISMEAYWRVQDPVYGSVGIINLLQHEIYMNQHELA 111
                     6********************************************************************************************** PP

          DUF260  96 llkeel 101
                     ++++++
  XP_010927283.1 112 RTQAQI 117
                     *99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.32116117IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3717114IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSSSNSNVSS NDSNPRRCAA CRYLRRRCAG DCILSPYFPA SNPQRFACVH KIFGASNVTR  60
MLQQLPVQQR AQAADAISME AYWRVQDPVY GSVGIINLLQ HEIYMNQHEL ARTQAQIAMY  120
TAQQQHQQQQ QEAPASQPVE ASNINPQQQD LLAPDRTFLD LSHFPDSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-341812412118LOB family transfactor Ramosa2.1
5ly0_B7e-341812412118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927283.21e-122LOW QUALITY PROTEIN: LOB domain-containing protein 24-like
SwissprotP594683e-48LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A2H3YNW14e-90A0A2H3YNW1_PHODC; LOB domain-containing protein 24-like isoform X1
STRINGXP_008801576.12e-90(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.12e-36LOB domain-containing protein 24