PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927372.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 162aa    MW: 18609.7 Da    PI: 9.6817
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927372.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09954346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+   +l+  a +++ ++   +W+ +ar +g g++++++k ++  
   XP_010927372.1  9 SWTPKQNKLFETALAKYDKEtpdRWHNVARAVG-GKSAEEVKRHYER 54
                     7******************9*************.**********975 PP
2Myb_DNA-binding24.65.8e-0899143345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      +WT+   +l+ +a +++  +   +W ++a+ +g  ++ +++k ++ 
   XP_010927372.1  99 SWTARQNKLFEEALAKYDRDtpdRWQKVANAVG-DKSVEEVKRHYE 143
                      7*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.591560IPR017884SANT domain
SMARTSM007171.3E-8658IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-12864IPR009057Homeodomain-like
PfamPF002493.4E-7954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-4962IPR009057Homeodomain-like
CDDcd001676.11E-71056No hitNo description
PROSITE profilePS5129312.77895150IPR017884SANT domain
SMARTSM007172.4E-896148IPR001005SANT/Myb domain
SuperFamilySSF466892.84E-1299152IPR009057Homeodomain-like
PfamPF002492.7E-699142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-699151IPR009057Homeodomain-like
CDDcd001674.41E-4106146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MASSSLSSSW TPKQNKLFET ALAKYDKETP DRWHNVARAV GGKSAEEVKR HYERLVEDIR  60
QIESGHVPFP SYRSSGGRVP SYLHMASSSM SSSRTTESSW TARQNKLFEE ALAKYDRDTP  120
DRWQKVANAV GDKSVEEVKR HYELLIKDIN YIESGRAQHR NY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-301162180RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800710.11e-48protein RADIALIS-like 1
SwissprotF4JVB82e-33RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1E5UUT94e-55A0A1E5UUT9_9POAL; Protein RADIALIS-like 3
STRINGXP_008800710.15e-48(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-35RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]