PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927560.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 1274aa MW: 140850 Da PI: 8.1585

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927560.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	1158	1181	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sFs+k +L+ H r XP_010927560.1 1158 HTCDieGCSMSFSTKQDLTLHKRD 1181 789999***************985 PP
2	zf-C2H2	12.7	0.0004	1183	1205	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H ++H XP_010927560.1 1183 CPvkGCGKKFFSHKYLVQHRKVH 1205 9999*****************99 PP
3	zf-C2H2	12.6	0.00043	1241	1267	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H XP_010927560.1 1241 YVCQepGCGQTFRFVSDFSRHKRKtgH 1267 99********************99666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	8.5E-17	30	71	IPR003349	JmjN domain
PROSITE profile	PS51183	13.716	31	72	IPR003349	JmjN domain
Pfam	PF02375	2.0E-13	32	65	IPR003349	JmjN domain
SMART	SM00558	9.4E-47	200	369	IPR003347	JmjC domain
PROSITE profile	PS51184	33.173	200	369	IPR003347	JmjC domain
SuperFamily	SSF51197	3.84E-25	218	370	No hit	No description
Pfam	PF02373	1.1E-36	233	352	IPR003347	JmjC domain
SMART	SM00355	9	1158	1180	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.967	1181	1210	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.49	1181	1205	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	9.01E-6	1183	1218	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.5E-5	1183	1209	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	1183	1205	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-8	1210	1235	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.406	1211	1240	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0029	1211	1235	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1213	1235	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.33E-10	1221	1264	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.0E-10	1236	1264	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.616	1241	1272	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.17	1241	1267	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1243	1267	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1274 aa Download sequence Send to blast
MAAAASASSA EPPPPPPPAE VPQWLKSLPL APEYHPTLAE FQDPIAYILK IEKEASSFGI 60 CKIVPPLPAP PKKTTVANLN RSFAAREPNP KKPPTFTTRQ QQIGFCPRRP RPVQKPVWQS 120 GEHYTLQQFE TKAKQFERAY LKKVTAARKG GLLSPLEIET LFWKACADKP FNVEYANDMP 180 GSGFAPLGAA RRWREEEATN VGETAWNMRG VSRAKGSLLR FMKEEIPGVT SPMVYVAMMF 240 SWFAWHVEDH ELHSLNYLHM GASKTWYGVP RDAALAFEEV VRVHGYCGEV NRLVTFALLG 300 EKTTVMTPEV LIGAGIPCCR LVQNAGDFVV TFPGAYHTGF SHGFNCGEAA NIATPGWLRV 360 AKEAAIRRAS INYPPMVSHF QLLYALALSL CTRMPRGIRS EPRSSRLKDK MKGEGEEMVK 420 NIFVQSVIQN NHLLSVLLDK GSSCVVLPQN GPDSPLCSNS LVRSQVKVKP RLSLGLCSHQ 480 EALEASRLLP SNDMLGWNAG IRDLSGFGTL KGNSVSVCQG KIISSATCKF GTADFYTSSL 540 DSQNGEGEKE GTLQGDGLLD QGLLSCVTCG ILSFACVAVI QPREAAAKCL MSTDYGFLGD 600 HIDGSGELRD VNQDTNRRTG QIERHIEDMV DDYWIPCGRY SAQVSEQGVE VLSDDTGQRG 660 ISALDLLASA YGGTSDTEDE EILHEKSACT DENDIKDSPL SCKPNEHPNV ANELQNFCSS 720 KDPNKEIDLS LVGSDSQNGT AQNSHYTGGS DDSSKLTNVS AGEKCQLKLE FHGSNQPENA 780 KSAEEDSLDD NREITTSNSS IKSMEEPRDF SYREADGACH AIGSDDNHQS NMKIGNPDFG 840 SENLSIQPDV CSESSEPTKD YPKIEAEAKL LAEELGIDYT WKDVHFKEAT KEDQERIRAA 900 LEDEEAIPMN SDWAVKLGIN LYYSANLSKS PLYSKQMPYN AVIYKAFGCN SPGNSSSKPK 960 ASSGRKPGRE KKIVVAGRWC GKVWMSNQVH PYLAHRNEDH EHDHVEKLYS QSTGRKSKVE 1020 ADLEDAPSKS IPSTSNATAA RKAGKKRKKP LRKASNKKPR RTQIDNSEDV EGVAETPSSS 1080 CGRVLRSSRS KHTEIANRKK LNMKDEAEGG PSTRLRKRPS KATEEVKTKS GGRKQIMKRK 1140 AKKAQATNLV TKDEDGEHTC DIEGCSMSFS TKQDLTLHKR DICPVKGCGK KFFSHKYLVQ 1200 HRKVHMDDRP LECPWKGCSM TFKWAWARTE HIRVHTGDRP YVCQEPGCGQ TFRFVSDFSR 1260 HKRKTGHSIR KGRR

Sequence ? help Back to Top

Protein Sequence Length: 1274 aa Download sequence Send to blast

MAAAASASSA EPPPPPPPAE VPQWLKSLPL APEYHPTLAE FQDPIAYILK IEKEASSFGI  60
CKIVPPLPAP PKKTTVANLN RSFAAREPNP KKPPTFTTRQ QQIGFCPRRP RPVQKPVWQS  120
GEHYTLQQFE TKAKQFERAY LKKVTAARKG GLLSPLEIET LFWKACADKP FNVEYANDMP  180
GSGFAPLGAA RRWREEEATN VGETAWNMRG VSRAKGSLLR FMKEEIPGVT SPMVYVAMMF  240
SWFAWHVEDH ELHSLNYLHM GASKTWYGVP RDAALAFEEV VRVHGYCGEV NRLVTFALLG  300
EKTTVMTPEV LIGAGIPCCR LVQNAGDFVV TFPGAYHTGF SHGFNCGEAA NIATPGWLRV  360
AKEAAIRRAS INYPPMVSHF QLLYALALSL CTRMPRGIRS EPRSSRLKDK MKGEGEEMVK  420
NIFVQSVIQN NHLLSVLLDK GSSCVVLPQN GPDSPLCSNS LVRSQVKVKP RLSLGLCSHQ  480
EALEASRLLP SNDMLGWNAG IRDLSGFGTL KGNSVSVCQG KIISSATCKF GTADFYTSSL  540
DSQNGEGEKE GTLQGDGLLD QGLLSCVTCG ILSFACVAVI QPREAAAKCL MSTDYGFLGD  600
HIDGSGELRD VNQDTNRRTG QIERHIEDMV DDYWIPCGRY SAQVSEQGVE VLSDDTGQRG  660
ISALDLLASA YGGTSDTEDE EILHEKSACT DENDIKDSPL SCKPNEHPNV ANELQNFCSS  720
KDPNKEIDLS LVGSDSQNGT AQNSHYTGGS DDSSKLTNVS AGEKCQLKLE FHGSNQPENA  780
KSAEEDSLDD NREITTSNSS IKSMEEPRDF SYREADGACH AIGSDDNHQS NMKIGNPDFG  840
SENLSIQPDV CSESSEPTKD YPKIEAEAKL LAEELGIDYT WKDVHFKEAT KEDQERIRAA  900
LEDEEAIPMN SDWAVKLGIN LYYSANLSKS PLYSKQMPYN AVIYKAFGCN SPGNSSSKPK  960
ASSGRKPGRE KKIVVAGRWC GKVWMSNQVH PYLAHRNEDH EHDHVEKLYS QSTGRKSKVE  1020
ADLEDAPSKS IPSTSNATAA RKAGKKRKKP LRKASNKKPR RTQIDNSEDV EGVAETPSSS  1080
CGRVLRSSRS KHTEIANRKK LNMKDEAEGG PSTRLRKRPS KATEEVKTKS GGRKQIMKRK  1140
AKKAQATNLV TKDEDGEHTC DIEGCSMSFS TKQDLTLHKR DICPVKGCGK KFFSHKYLVQ  1200
HRKVHMDDRP LECPWKGCSM TFKWAWARTE HIRVHTGDRP YVCQEPGCGQ TFRFVSDFSR  1260
HKRKTGHSIR KGRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ip0_A	2e-74	23	458	7	413	Transcription factor jumonji (Jmj) family protein
6ip4_A	2e-74	23	458	7	413	Arabidopsis JMJ13
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1044	1048	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269\|PubMed:24280387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269\|PubMed:24280387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927559.1	0.0	lysine-specific demethylase REF6
Swissprot	Q5N712	0.0	JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBL	A0A2H3YDT2	0.0	A0A2H3YDT2_PHODC; LOW QUALITY PROTEIN: lysine-specific demethylase JMJ705-like
STRING	XP_008797141.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	relative of early flowering 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]