PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927585.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 285aa    MW: 29574 Da    PI: 6.7076
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927585.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002387109123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_010927585.1  87 FSCNYCQRKFYSSQALGGHQNAH 109
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-684114No hitNo description
PROSITE profilePS5015711.42787114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTSVHRKMEE EKGMEEKKVA PLVEDEGEPK EVILVDLEAA AAEDGGEGST SAPPVLELNL  60
IGSFGSAEAD QPPVTVESEP ESEPRVFSCN YCQRKFYSSQ ALGGHQNAHK RERTLAKRGA  120
GHRHAGFAGD HAGGVGGAPY HFPPSMASLP LHGSTYPGRP LGIQMHSMVH KPSYIGTTTA  180
SMAAAGLLYG RHGGWSRPPP PFVNRQPASG RMFTEELYGA TRAPVARFEE SAGATAGGFR  240
WIGGGGGGGG GVGGGDAGGA GGGGGGSHLH VRQEELTKLD LSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927585.20.0zinc finger protein 3-like
TrEMBLA0A2H3YHT31e-135A0A2H3YHT3_PHODC; zinc finger protein 3-like
STRINGXP_008798728.11e-136(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-31zinc-finger protein 1