PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927748.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YB

Protein Properties

Length: 202aa MW: 21529.6 Da PI: 4.4273

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927748.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	42.5	1.6e-13	68	138	24	94
NF-YB 24 nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 + k+ kda e + fi ++++ a+d c++ +r+tin++d++ a+ ++ f +++epl++ l+ +r + XP_010927748.1 68 ELKVHKDALLAFAESARIFIHYLSATANDICKESNRQTINAEDVIRAIEEIEFPEFIEPLRISLEDFRRKN 138 45999**************************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-32	40	176	IPR009072	Histone-fold
SuperFamily	SSF47113	4.51E-25	41	167	IPR009072	Histone-fold
Pfam	PF00808	4.1E-9	67	115	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MPKKDGGGGE GGAAPAPGEM AKKDGGGGEG GAAPAPTVEE LPRAIVRRVV KDKLAELSSE 60 GAGGGEEELK VHKDALLAFA ESARIFIHYL SATANDICKE SNRQTINAED VIRAIEEIEF 120 PEFIEPLRIS LEDFRRKNVA KKSGTKAKET DRKRKLEQET PTQNGYDGTE GAAEEEDNGH 180 DGIEGATEED REGQGNSPEN DG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5y26_A	4e-11	41	134	18	100	DNA polymerase epsilon subunit D
5y27_A	4e-11	41	134	18	100	DNA polymerase epsilon subunit D
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	154	RRKNVAKKSGTKAKETDRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927748.1	1e-142	DNA polymerase epsilon subunit 3
TrEMBL	A0A199VB19	2e-63	A0A199VB19_ANACO; DNA polymerase epsilon subunit 3
STRING	GSMUA_Achr8P07750_001	2e-56	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10414	37	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	6e-27	nuclear factor Y, subunit B11