PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927809.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Whirly
Protein Properties Length: 241aa    MW: 27088.2 Da    PI: 10.1864
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927809.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly192.66.1e-60642012139
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     ++k+ka+l v +v+ptf+ ldsg+ k++r+G ++l++++a+++rkyd ekkq falsate++ l++l++ esceffhdp++k+s eG+v+k+l+v
  XP_010927809.1  64 IFKGKASLAVSPVLPTFSRLDSGSSKVDRRGVVMLKFMPAIGQRKYDSEKKQLFALSATEIGCLISLGPAESCEFFHDPSMKSSLEGQVQKTLSV 158
                     9********************************************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      Pl++G G+f+nl+v ns++k+n++fsvPv+kaefav+r +++
  XP_010927809.1 159 SPLTNGEGYFFNLAVMNSVQKTNDRFSVPVTKAEFAVMRAAFS 201
                     ***************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.3E-6952216IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.1E-6155239IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.5E-5664198IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MMKLSRFWLP RNQLASKFLP VKNSNIKETS WFSNYSSRLG ISTARSDSIK HGNYSGKTYA  60
DFCIFKGKAS LAVSPVLPTF SRLDSGSSKV DRRGVVMLKF MPAIGQRKYD SEKKQLFALS  120
ATEIGCLISL GPAESCEFFH DPSMKSSLEG QVQKTLSVSP LTNGEGYFFN LAVMNSVQKT  180
NDRFSVPVTK AEFAVMRAAF SFVLPYIMGW DQVIKPKLES IGVERPMQRE MRADPDFEWG  240
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-73522195172StWhy2
3n1i_A1e-73522195172protein StWhy2
3n1j_A1e-73522195172Protein StWhy2
3n1k_A1e-73522195172protein StWhy2
3n1l_A1e-73522195172protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927809.11e-180single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0345e-81WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2H3YU051e-160A0A2H3YU05_PHODC; single-stranded DNA-binding protein WHY2, mitochondrial-like
STRINGXP_008803798.11e-161(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.13e-74WHIRLY 2