PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927866.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 25523.6 Da    PI: 7.1651
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927866.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.6e-26958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ +iifs++gklye +
  XP_010927866.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGIIIFSTHGKLYELA 58
                    79*********************************************965 PP
2K-box54.84.2e-1982173999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGed.LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      e ++ ++ +qe+  Lkkei  Lq+ +R + G++  +++ l+eL+ Le++Le    kiR+ K+++++++i+ l++ke+ l  +n+ L++k+ 
  XP_010927866.1  82 GEVNQPQEPEQEILMLKKEIYLLQKCLRYMFGDGgAGNMALEELHALERHLEIWTYKIRALKMQIMFQEIQSLKNKERVLTAANELLQEKIV 173
                     556788999***********************96489****************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-28175IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002654.03E-40375No hitNo description
PfamPF003191.5E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-2184172IPR002487Transcription factor, K-box
PROSITE profilePS5129711.93687178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVRGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGIIIFST HGKLYELATK  60
GTMEGLIQRY RKASGEVQTE GGEVNQPQEP EQEILMLKKE IYLLQKCLRY MFGDGGAGNM  120
ALEELHALER HLEIWTYKIR ALKMQIMFQE IQSLKNKERV LTAANELLQE KIVEQNGHLD  180
VAPMTIHQNG HFDVGPEIAD IPYPLTTQDE CSTFRSSEMG YSCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-15390277Myocyte-specific enhancer factor 2A
3kov_B1e-15390277Myocyte-specific enhancer factor 2A
3kov_I1e-15390277Myocyte-specific enhancer factor 2A
3kov_J1e-15390277Myocyte-specific enhancer factor 2A
3p57_A1e-15390277Myocyte-specific enhancer factor 2A
3p57_B1e-15390277Myocyte-specific enhancer factor 2A
3p57_C1e-15390277Myocyte-specific enhancer factor 2A
3p57_D1e-15390277Myocyte-specific enhancer factor 2A
3p57_I1e-15390277Myocyte-specific enhancer factor 2A
3p57_J1e-15390277Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029121861.11e-167MADS-box transcription factor 26
SwissprotA2YQK94e-96MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G84e-96MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A2H3XH751e-141A0A2H3XH75_PHODC; LOW QUALITY PROTEIN: MADS-box transcription factor 26-like
STRINGXP_008783731.11e-135(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-65AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]