PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927875.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

ZF-HD

Protein Properties

Length: 263aa MW: 29091.1 Da PI: 8.8117

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927875.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.7	1.2e-32	67	122	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhAas+Gg+a+DGCgEfmps geegt +alkC+AC CHRnFHR+e e XP_010927875.1 67 VVRYRECLKNHAASIGGNATDGCGEFMPS-GEEGTLEALKCSACSCHRNFHRKEIEG 122 69************************9.999******************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.6E-30	68	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-23	68	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.3E-31	69	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.137	70	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.6E-29	186	258	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.86E-19	188	257	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.2E-27	196	252	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MDLSGHEGEI PSPITAKFSG AYGHSLPSDS PSLHSSSDGP PLPPFSTAPI EEQQATIHST 60 KKLGGAVVRY RECLKNHAAS IGGNATDGCG EFMPSGEEGT LEALKCSACS CHRNFHRKEI 120 EGEYHHHHLK ERNFVGHKGV LISRAEGFGY YNNPASHSLM PSPLPHQMVM PLGALQASEP 180 DQMEGVGGAR AAQMVKKRFR TKFTPEQKEK MLNFAHRIGW RLQRQEEGMV QQFCQEIGVK 240 RRVLKVWMHN NKHSLAKKEL PPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	2e-24	195	254	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927875.1	0.0	zinc-finger homeodomain protein 4
Swissprot	O64722	3e-72	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	A0A3Q0I3C0	1e-150	A0A3Q0I3C0_PHODC; zinc-finger homeodomain protein 4-like
STRING	XP_008789175.1	1e-141	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	6e-74	homeobox protein 21

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]