PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010927922.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 249aa    MW: 25961.3 Da    PI: 8.3854
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010927922.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601391.6e-43251241100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC++dCv+apyfp +qp+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq++l+ql+ +l+
  XP_010927922.1  25 PCAACKFLRRKCQPDCVFAPYFPPDQPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISILQHRLRQLQMDLS 119
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                      +++e
  XP_010927922.1 120 CARAE 124
                     99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.76624125IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-4325122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MASSSAPVPA SSSAAAALST STSSPCAACK FLRRKCQPDC VFAPYFPPDQ PQKFVHVHRV  60
FGASNVTKLL NELHPYQRED AVNSLAYEAD MRLRDPVYGC VGVISILQHR LRQLQMDLSC  120
ARAELSKYQS AAAAAGGPSA ANFSSGLATA GGHGYVNANH PIGVGSIVLG REQFFPVAAT  180
AAREPHPHHH AMMRNHEGEL VARLGANGAY DAGLVAAMNA SAVSIGPLGG QFMKPSAAGG  240
DERPSVGPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-52151281114LOB family transfactor Ramosa2.1
5ly0_B1e-52151281114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010927922.10.0LOB domain-containing protein 6
SwissprotQ32SG31e-84LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A2H3Z1W91e-141A0A2H3Z1W9_PHODC; LOB domain-containing protein 6
STRINGXP_008807271.11e-142(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.42e-59LBD family protein