PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010927976.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WRKY

Protein Properties

Length: 237aa MW: 26582.5 Da PI: 9.0789

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010927976.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103	1.7e-32	161	219	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt ++C+vkk+ver aedp++v++tYeg+H h+ XP_010927976.1 161 LDDGYKWRKYGQKVVKNTQHPRSYYRCTESNCQVKKRVERLAEDPRMVITTYEGRHIHS 219 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-33	146	219	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-28	154	220	IPR003657	WRKY domain
PROSITE profile	PS50811	29.551	156	221	IPR003657	WRKY domain
SMART	SM00774	7.1E-37	161	220	IPR003657	WRKY domain
Pfam	PF03106	1.7E-25	162	218	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MFPSKANAVL NQGFVEDPMS FCTQISPLSH LSFPPHGIQQ TLGGLNMGGG VASYLKEGLP 60 SIPSQYRVAS SGGLGQFGAS SEQRSSNSLW SYDEEEGDLG NKISSAGEDN HKYNKNNSSS 120 SNNNNNNSLS VGAIRMKKLK TRKKVREPRF CFKTLSEVDV LDDGYKWRKY GQKVVKNTQH 180 PRSYYRCTES NCQVKKRVER LAEDPRMVIT TYEGRHIHSP SHDDDESRAS DHINFLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	152	218	8	74	Probable WRKY transcription factor 4
2lex_A	2e-27	152	218	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010927976.1	1e-179	probable WRKY transcription factor 13
TrEMBL	A0A2H3Y8D2	1e-149	A0A2H3Y8D2_PHODC; probable WRKY transcription factor 13
STRING	XP_008794985.1	1e-149	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1138	38	130

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	2e-60	WRKY DNA-binding protein 13