PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928087.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 249aa    MW: 27105.5 Da    PI: 7.06
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928087.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.11.2e-5356151297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqdrf+Pianv+rim+kvlP +akis+daket+qecvsefisf+t+ea+++cqre+rkti+++d++wa+++lGf+dyv+pl+ yl++yreleg+
  XP_010928087.1  56 REQDRFMPIANVIRIMRKVLPLHAKISDDAKETIQECVSEFISFITGEANERCQREHRKTITAEDVIWAMGKLGFDDYVAPLSRYLQRYRELEGD 150
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     +
  XP_010928087.1 151 Q 151
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.5E-4952153IPR009072Histone-fold
SuperFamilySSF471139.01E-3858153IPR009072Histone-fold
PfamPF008082.9E-2561125IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.5E-1589107No hitNo description
PROSITE patternPS00685092108IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.5E-15108126No hitNo description
PRINTSPR006154.5E-15127145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MARPFASGVN SSQAGPAGGV DADQSGPTAG NPVLPGSTAR ATATSSTTQP QVGNLREQDR  60
FMPIANVIRI MRKVLPLHAK ISDDAKETIQ ECVSEFISFI TGEANERCQR EHRKTITAED  120
VIWAMGKLGF DDYVAPLSRY LQRYRELEGD QRAGLRGEHF PIIKQRRHPQ ISDTGRATDV  180
GAQPLSMRSP PPQAPPPSNL VMPPIVPPPR VNHLFGEDPR AGYFLEMYWG GDGSGSSNSG  240
APPMPDFFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-5554146597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928085.10.0nuclear transcription factor Y subunit B-2 isoform X1
RefseqXP_010928086.10.0nuclear transcription factor Y subunit B-2 isoform X2
RefseqXP_010928087.10.0nuclear transcription factor Y subunit B-2 isoform X2
TrEMBLA0A2H3YXS81e-138A0A2H3YXS8_PHODC; nuclear transcription factor Y subunit B-10
STRINGXP_008805507.11e-139(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.25e-58nuclear factor Y, subunit B6