PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010928108.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 301aa MW: 31857.3 Da PI: 7.3902

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010928108.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	3e-39	35	95	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 + +kcprCdstntkfCyynny+lsqPr+fCkaCrryWtkGG lrnvPvGgg+rk k+sss XP_010928108.1 35 QPPIKCPRCDSTNTKFCYYNNYNLSQPRHFCKACRRYWTKGGVLRNVPVGGGCRKTKRSSS 95 6679*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.6E-33	37	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.553	38	92	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-26	38	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MQDFQSIPGV AGRIFGGGED LRRLRGYPAA AAAQQPPIKC PRCDSTNTKF CYYNNYNLSQ 60 PRHFCKACRR YWTKGGVLRN VPVGGGCRKT KRSSSSSSSN SKTAKSSSAG GDRDSHRPSA 120 SLSSSDDCSL TAPNTEVSTS ASFPDSTLFA PSQTSLPNPP FHPPPQPVGP DTLGQQAPEI 180 FTEAVGASSF TGLMPAAATS PSVLRFNFSD PPPIQLGPQQ SPPKAAATVA EEVRMPGIMD 240 QTVPVDLPPF QGRSGGGDGH TGLEWPASVD PSLFDLTSAV DPGAYWNQSH WGDNDPSLYL 300 P

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010928108.1	0.0	dof zinc finger protein 4
TrEMBL	A0A2H3Z8B6	1e-156	A0A2H3Z8B6_PHODC; dof zinc finger protein 4-like
STRING	XP_008809677.1	1e-157	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	1e-32	OBF binding protein 4