PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928232.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family E2F/DP
Protein Properties Length: 399aa    MW: 44556.3 Da    PI: 9.0892
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928232.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP73.91.7e-232085171
         E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                    rk+ksL+ll++kf++l+ + + + v+l+++a++L    v  +rRRiYDi+NVLe+++++++++kn+++w+g
  XP_010928232.1 20 RKQKSLGLLCSKFVSLYDRDDVESVSLDDAARRL---GV--ERRRIYDIVNVLESVGVLARNAKNRYSWIG 85
                    79****************9999************...**..****************************98 PP
2E2F_TDP69.73.4e-22160244171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.........dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     r+eksL+lltq+f+kl+ ++++++v+l+e+a+ L+ +         +   k+RR+YDi+NVL+++nl+ek     ++k++ rw g
  XP_010928232.1 160 RREKSLGLLTQNFVKLFLTTDAEMVSLDEAARLLLGDgcdssqmrnNNAAKVRRLYDIANVLSSINLLEKtqqldTRKPALRWLG 244
                     689***************************************999966689*******************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.7E-271686IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.9E-161984IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-282085IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-212185IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.0E-22157245IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-26160244IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.2E-17162244IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.63E-11162245IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MTSLPPPFLE SGYRHHTYSR KQKSLGLLCS KFVSLYDRDD VESVSLDDAA RRLGVERRRI  60
YDIVNVLESV GVLARNAKNR YSWIGFSGIP KALFELKEEA LKEMSGTDSP CVKVLEDEED  120
DRSSDQNGDF ADYKLSPASM DAASSLCSAA CRARSVTDKR REKSLGLLTQ NFVKLFLTTD  180
AEMVSLDEAA RLLLGDGCDS SQMRNNNAAK VRRLYDIANV LSSINLLEKT QQLDTRKPAL  240
RWLGTKGKPR ADNDVAVAIT PSTKQRSKRA FGTDITNADY KRSKLNPPAD KKPSKARLRT  300
DDSKECNLMG QTQLQNSKGG YVFGPFQPDG VSKGSGDVEE KGGNKLQDWE SLASSFRPQY  360
HNQALSELFG HYMEAWKLWY VEVAQGSRKL QQPCKSVIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-35192363228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928232.10.0E2F transcription factor-like E2FE isoform X1
TrEMBLA0A2H3Y5N10.0A0A2H3Y5N1_PHODC; E2F transcription factor-like E2FE
STRINGXP_008793779.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.11e-85DP-E2F-like protein 3