PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928345.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 158aa    MW: 17346.6 Da    PI: 10.0715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928345.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-172371355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr +k +g+WvAeIr+p   +kr r++lg++ ++  Aaka++ a  +l+g
  XP_010928345.1 23 YRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAAKAYDTAVFYLRG 71
                    9*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-352285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-292280IPR001471AP2/ERF domain
PROSITE profilePS5103222.262279IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-212281IPR016177DNA-binding domain
CDDcd000181.55E-232379No hitNo description
PRINTSPR003674.2E-122334IPR001471AP2/ERF domain
PfamPF008478.5E-112371IPR001471AP2/ERF domain
PRINTSPR003674.2E-126181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEEESPSPPP PTAARKEGKE RLYRGVRMRK WGKWVAEIRE PNKRSRIWLG SYSSPVAAAK  60
AYDTAVFYLR GRSARLNFPD DLAVDVDADA AMSAALIRKK ATEVGARVDA LHATAPASLA  120
AGARSPAADH RRRLAYKRPD LNQKPSPESS DEDCELSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-141979263ATERF1
3gcc_A2e-141979263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928345.21e-110ethylene-responsive transcription factor ERF011
SwissprotQ9FH941e-44ERF10_ARATH; Ethylene-responsive transcription factor ERF010
SwissprotQ9SNE17e-45ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A2H3XUD76e-80A0A2H3XUD7_PHODC; ethylene-responsive transcription factor RAP2-1
STRINGXP_008788844.11e-80(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.15e-40cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]