PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010928416.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 433aa MW: 46918.7 Da PI: 9.3599

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010928416.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	198	220	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F + L+ H + H XP_010928416.1 198 TCHKCGEQFGKLEALEAHHLSkH 220 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	199	220	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.06E-19	222	432	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.6E-9	244	406	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MPTVWFTLKK SLQCKSEPSD VHDPKARVPL AILTRRPGRS GCSRSIANLK DVIHGSKRHL 60 EKPPSCSPRS IGSSEFLNPI THEVILSNSR CELRITGFGG CHEGEAGVGS TYVGTLRPGT 120 PGPGGHFGLQ HNPSVRGAST TPPRRSPSLL GDKEGYGFGG SSLSSAVFAN GGGGVHRVSF 180 TPRASHEARS HGSSANITCH KCGEQFGKLE ALEAHHLSKH AVTELVEGDS SRKIVEIICR 240 TSLVKSESSC WRIERVLKVH NMQKTLARFE EYREMVKLRA SKLPKKHPRC LADGNELLRF 300 YGTTIACSLG MNGTSSLCSS EKCNVCQIIR YGFPTKKELK GGIGIGVFTT STSGRAFESI 360 EIYEDDPNVK KALLVCRVIA GRVHKPLDNF QELAGESGFD SLAGKVGLYA SFEELYLLSP 420 RALLPCFVVI CKS

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MPTVWFTLKK SLQCKSEPSD VHDPKARVPL AILTRRPGRS GCSRSIANLK DVIHGSKRHL  60
EKPPSCSPRS IGSSEFLNPI THEVILSNSR CELRITGFGG CHEGEAGVGS TYVGTLRPGT  120
PGPGGHFGLQ HNPSVRGAST TPPRRSPSLL GDKEGYGFGG SSLSSAVFAN GGGGVHRVSF  180
TPRASHEARS HGSSANITCH KCGEQFGKLE ALEAHHLSKH AVTELVEGDS SRKIVEIICR  240
TSLVKSESSC WRIERVLKVH NMQKTLARFE EYREMVKLRA SKLPKKHPRC LADGNELLRF  300
YGTTIACSLG MNGTSSLCSS EKCNVCQIIR YGFPTKKELK GGIGIGVFTT STSGRAFESI  360
EIYEDDPNVK KALLVCRVIA GRVHKPLDNF QELAGESGFD SLAGKVGLYA SFEELYLLSP  420
RALLPCFVVI CKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010928416.1	0.0	uncharacterized protein LOC105050187
TrEMBL	A0A2H3X123	0.0	A0A2H3X123_PHODC; uncharacterized protein LOC103696776
STRING	XP_008776712.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3277	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-166	C2H2 family protein