PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928609.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 241aa    MW: 27921.7 Da    PI: 7.3942
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928609.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.19.7e-2167120356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe ++++  e++ eLA+klgL+ rqV vWFqNrRa++k
  XP_010928609.1  67 KKRRLTPEQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWK 120
                     5678*************************************************9 PP
2HD-ZIP_I/II131.82.6e-4266155190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     ekkrrl+ eqv+lLE+sFe+e+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l +++++L k++++Lr++
  XP_010928609.1  66 EKKRRLTPEQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKSSYDSLLADHDSLLKDNDRLRSQ 155
                     69*************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007118.05862122IPR001356Homeobox domain
SMARTSM003894.7E-2065126IPR001356Homeobox domain
CDDcd000866.67E-1867123No hitNo description
SuperFamilySSF466892.47E-1967132IPR009057Homeodomain-like
PfamPF000465.6E-1867120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.5E-2268129IPR009057Homeodomain-like
PRINTSPR000319.2E-793102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000319.2E-7102118IPR000047Helix-turn-helix motif
PfamPF021831.8E-13122155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDSGHLIFDS SSSHHGRMLL LGGGSPIFQG ARSVLGMEEG ANKRRLFFTS PDELLEEEYY  60
DEQLPEKKRR LTPEQVHLLE RSFEAENKLE PERKSELARK LGLQPRQVAV WFQNRRARWK  120
TKQLERDFDR LKSSYDSLLA DHDSLLKDND RLRSQDCRNK TLHHRTSRDG TRSTTPGESI  180
SVIPFNFDGT LVLYLSNISI EWMIIMTDMP LIAMHGKGDA FFGLGGGLLF WKIYEHLFFP  240
H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029121995.11e-161pituitary homeobox 3 isoform X1
SwissprotQ022839e-64HAT5_ARATH; Homeobox-leucine zipper protein HAT5
SwissprotQ6YWR41e-63HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A2H3XD951e-87A0A2H3XD95_PHODC; homeobox-leucine zipper protein HOX16 isoform X1
STRINGXP_008781998.12e-88(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-66homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]