PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928670.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 448aa    MW: 48481.4 Da    PI: 7.1008
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928670.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.1e-15114173155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+ ++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_010928670.1 114 SIYRGVTKHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDQEEKAARAYDLAALKYWG 173
                     57*******************666664477446*************************98 PP
2AP246.78e-15218267355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010928670.1 218 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 267
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-17114183IPR016177DNA-binding domain
CDDcd000183.74E-20114183No hitNo description
PfamPF008477.4E-12114173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-16115182IPR001471AP2/ERF domain
PROSITE profilePS5103219.243115181IPR001471AP2/ERF domain
SMARTSM003805.8E-30115187IPR001471AP2/ERF domain
PRINTSPR003671.8E-6116127IPR001471AP2/ERF domain
CDDcd000183.33E-22216277No hitNo description
SuperFamilySSF541716.54E-18216277IPR016177DNA-binding domain
PROSITE profilePS5103219.203217275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-18217276IPR001471AP2/ERF domain
SMARTSM003807.1E-33217281IPR001471AP2/ERF domain
PfamPF008471.1E-9218267IPR001471AP2/ERF domain
PRINTSPR003671.8E-6257277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDASNNWLAF SLSHHPGGQE RAEEGCCAAG GNLTMLAAEG PKLEDFLGGC GGFSSSDAAA  60
AETGTHGGCD SDLRSIAAGF MQGFPAERPD SLATATSVTA EPRRASETFG QRTSIYRGVT  120
KHRWTGRYEA HLWDNSCRRE GQSRKGRQVY LGGYDQEEKA ARAYDLAALK YWGPNTTTNF  180
PVSNYEKQLE EMKNMTRQEF VASLRRKSSG FSRGASMYRG VTRHHQHGRW QARIGRVAGN  240
KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDMSRYD VESIINSDLP IGGVSSKAFK  300
ASDSSSTSSN SNARHQTGGG DAIALPSEQD QDYWSLLALH QQQQHRNLVS GFEVFGSGVN  360
MDFSAAASVG GIGQGRVGTV VWNGGMVQQQ EPSQSRSSSV PFAPPVSFGM GYENSGYVGA  420
TWVTPSYYYQ QGAKPTVAAL RTALYGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928669.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-133AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2H3XW610.0A0A2H3XW61_PHODC; AP2-like ethylene-responsive transcription factor AIL5
STRINGXP_008789664.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-130AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]