PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928678.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 403aa    MW: 43629.7 Da    PI: 9.4263
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928678.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.7e-41158234177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cq+egC+adls ak+yhrrhkvCe+h+ka+vv++ gl+qrfCqqCsrfh l efD +krsCr+rLa+hn+rrrk+q
  XP_010928678.1 158 RCQAEGCKADLSGAKHYHRRHKVCEFHAKAAVVITGGLHQRFCQQCSRFHVLAEFDATKRSCRKRLADHNRRRRKPQ 234
                     6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.2E-34153220IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.197156233IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-39157236IPR004333Transcription factor, SBP-box
PfamPF031103.6E-31159232IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MINRANSTEG YVPSMVSFVG LEGSNQRQQP WDWDTTTTLH HHPIATAIPA AASNASLALQ  60
NHHPFFHTSS QLDCLPSLFP GNSLPFYSPP VVDYPAAAAE ALVKREDCGG ATAAVAGAGR  120
IGLNLGHRTY FSSGDALAID RLFARSRGLY SLSHQPPRCQ AEGCKADLSG AKHYHRRHKV  180
CEFHAKAAVV ITGGLHQRFC QQCSRFHVLA EFDATKRSCR KRLADHNRRR RKPQLPAGNA  240
DSSAPRNPTT NSGEKSKQIS KPPRDDSTGK STAAICKTSA SLEGQLEYSN KANPLRHGPD  300
LSLGGVGPVK KGVMGSSNAM RQNQGQSVAM AEEIKVPQQQ QQLLSFSSPS ASSGTFFHHY  360
NLISSTSNEA SPSPGGDSDH TTRHHHQNNL LHLGQAMFEV DFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-291592321184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215232KRSCRKRLADHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928678.10.0squamosa promoter-binding-like protein 10
TrEMBLA0A2H3WY950.0A0A2H3WY95_PHODC; squamosa promoter-binding-like protein 10 isoform X1
STRINGXP_008775519.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-48squamosa promoter binding protein-like 8