PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928865.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 432aa    MW: 48683.7 Da    PI: 4.9544
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928865.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.14.1e-17116207175
        trihelix   1 rWtkqevlaLiearr............emeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                     +Wt++ v++Li+++                                   +kk++W+ vs  m+e g  +sp+qC++k++++nkryk++++  + +
  XP_010928865.1 116 KWTDEVVRLLIRIVAlvgddgayeavdG--------TpgavkrkhgaafQKKGKWKMVSLLMQENGAYVSPQQCEDKFNDMNKRYKRLNDLLGPG 202
                     7**************5555555554430........0444445666666****************************************998877 PP

        trihelix  72 .tses 75 
                      ++++
  XP_010928865.1 203 vSCDV 207
                     45555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-15114243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDNSMMSSGL LPGSSAGILD HDPSVHHRRQ QHHPLPHLQP MPAAGIDPGH AMPLFDPAPS  60
LNPPPRGKGI YASATTSEND DQLPAAAVEG DGHGQQSPVP GGAGLGKKGS PWQRMKWTDE  120
VVRLLIRIVA LVGDDGAYEA VDGTPGAVKR KHGAAFQKKG KWKMVSLLMQ ENGAYVSPQQ  180
CEDKFNDMNK RYKRLNDLLG PGVSCDVVHD PASLESMPIS QKAKNDVRKI LSSKHLFYKE  240
MCAYHSGQKI PNCPDINLQS CLLSQVAPSK DGNQCFDGEE EEEEEEEEEE DNVGNEEEGS  300
EEVGRGRFED FLAEIDAVLQ DPTRPPLERR KWLKMRALQL EEERLDIETE ALAIERQRFK  360
WQRFSSKKDR EIERSRLDNE RLMLENEQMM ILVRKEELEL DFRRSGDPLM ESTGFRMEEE  420
RGREQMESGR VH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928865.10.0uncharacterized protein LOC105050511
TrEMBLA0A2H3XF710.0A0A2H3XF71_PHODC; uncharacterized protein LOC103702316
STRINGXP_008782906.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1947058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.18e-49sequence-specific DNA binding transcription factors