PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010928920.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 172aa    MW: 18111.8 Da    PI: 9.6824
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010928920.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.27.3e-22858256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a+++a+++l+ge
  XP_010928920.1  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDQAARSLRGE 58
                    69*******.**********883....5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-23866IPR016177DNA-binding domain
PROSITE profilePS5103222.84865IPR001471AP2/ERF domain
CDDcd000182.33E-28864No hitNo description
SMARTSM003803.6E-38871IPR001471AP2/ERF domain
PfamPF008479.4E-15858IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32865IPR001471AP2/ERF domain
PRINTSPR003674.9E-11920IPR001471AP2/ERF domain
PRINTSPR003674.9E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGSRGEGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAALAYDQ AARSLRGEKA  60
KTNFPLPSPP PPHLSLDLNL PCHLWMGPPA PVPPAPPPPP PQAVAAAMGS RPPSTILMLG  120
GFGGGGHCPP GMGREVAQEP AAAASASFFG AVARGLPFDL NEPPPAASLL FG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22866564ATERF1
3gcc_A2e-22866564ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928920.11e-119ethylene-responsive transcription factor 12
TrEMBLA0A2H3XWC74e-67A0A2H3XWC7_PHODC; ethylene-responsive transcription factor 12-like
STRINGXP_008789748.16e-68(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.18e-34ERF domain protein 12