PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010928969.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 228aa MW: 26251.6 Da PI: 7.8044

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010928969.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7.5e-20	93	147	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeql+ Le+ F+++++++++++++LA +l+L rqV vWFqNrRa+ k XP_010928969.1 93 RKKLRLTKEQLTLLEKRFREHHTLNQTQKQQLAGQLNLRPRQVEVWFQNRRARTK 147 678899***********************************************98 PP
2	HD-ZIP_I/II	114	9.2e-37	93	181	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLE+ F+e+++L++++K++la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+ +++l+ en+rL++e eeLr+ XP_010928969.1 93 RKKLRLTKEQLTLLEKRFREHHTLNQTQKQQLAGQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKYCENLRIENRRLKRELEELRA 181 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.11E-19	83	150	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-19	88	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.896	89	149	IPR001356	Homeobox domain
SMART	SM00389	7.4E-15	91	153	IPR001356	Homeobox domain
Pfam	PF00046	2.7E-17	93	147	IPR001356	Homeobox domain
CDD	cd00086	1.42E-14	93	150	No hit	No description
PROSITE pattern	PS00027	0	124	147	IPR017970	Homeobox, conserved site
Pfam	PF02183	6.5E-9	149	182	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	7.3E-16	149	192	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MEEDECNIGL GLAIGGGRHF SSHQSSNGGG KSPVQFHILF PPQQKQGEEE EEEEEEEEEP 60 RREEQHKSKN INEEEDTMSA KDISDGGSNQ VGRKKLRLTK EQLTLLEKRF REHHTLNQTQ 120 KQQLAGQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK YCENLRIENR RLKRELEELR 180 AMEPGCPFHI RVPKAATLLT MCPSCKRISD KGNGALDTMK GRPSGSCK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010928969.1	1e-167	homeobox-leucine zipper protein HAT22-like
Swissprot	A2Z1U1	8e-50	HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
Swissprot	Q67UE2	7e-49	HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBL	A0A3Q0I4S7	1e-110	A0A3Q0I4S7_PHODC; homeobox-leucine zipper protein HAT9-like
STRING	XP_008789723.1	1e-106	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8130	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-40	homeobox from Arabidopsis thaliana