PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929079.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CO-like
Protein Properties Length: 290aa    MW: 31969.4 Da    PI: 5.2337
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929079.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.2e-07851441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+ + + +   +C+ +   lC+ C   +H+       H ++p
  XP_010929079.1  8 EACESCRSAPCAVYCRADAAALCAACDADIHSAnllarrHHRIP 51
                    67*****************************6688888866665 PP
2CCT706.2e-24221264144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_010929079.1 221 REAKVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRS 264
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.206552IPR000315B-box-type zinc finger
SMARTSM003361.2E-11552IPR000315B-box-type zinc finger
PfamPF006433.6E-5852IPR000315B-box-type zinc finger
PROSITE profilePS5101716.539221263IPR010402CCT domain
PfamPF062031.2E-17221263IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNDMVKVEAC ESCRSAPCAV YCRADAAALC AACDADIHSA NLLARRHHRI PIIAGPAGGF  60
VVRPSLNQYN HVGGKAETEL HGEEEENDDD GDGLLFGEEV DGFLDLDEYN SGAENQSTSR  120
KQQQSYPSNG RSEDSEHLVP NGQQQQQQSF QYEASEAGFD NFGYGASLSH SLSLSSMEAS  180
IVPDITLADI SNSHLRPSKG TIDFFSGLPL QMPPQCTPMD REAKVLRYRE KKKARKFEKT  240
IRYASRKAYA ETRPRIKGRF AKRSDVELAV DQLFSTTVTT DSSYGIIPSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929079.10.0zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2H3XFM21e-117A0A2H3XFM2_PHODC; zinc finger protein CONSTANS-LIKE 2-like
STRINGXP_008783055.11e-118(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1435899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.18e-48CONSTANS-like 2