PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929112.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 168aa    MW: 17939.3 Da    PI: 10.3189
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929112.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP742.5e-2369116148
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                     +Cq+e+C+adl+eak+yhrrhkvCe+hskapvv+v+gl+qrfCqqCs 
  XP_010929112.1  69 CCQAEKCTADLTEAKRYHRRHKVCEAHSKAPVVIVAGLRQRFCQQCSS 116
                     6*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-2562116IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.1767157IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-2268117IPR004333Transcription factor, SBP-box
PfamPF031108.6E-1870116IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MERRPPSEPK RSGKEKARKG AAAAAADGGD EEEVAAGEEE DKKRRPPAPA PASSAARRGS  60
GGGGASQPCC QAEKCTADLT EAKRYHRRHK VCEAHSKAPV VIVAGLRQRF CQQCSSAGSM  120
RYQSLMTLRG VAVDAWLATM SGAERVLLNH RERDPAAAGR LIKMGGFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-18701151156squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929112.11e-118squamosa promoter-binding-like protein 13 isoform X2
TrEMBLA0A2H3ZJB74e-40A0A2H3ZJB7_PHODC; squamosa promoter-binding protein 1 isoform X1
TrEMBLA0A3Q0HUM11e-40A0A3Q0HUM1_PHODC; squamosa promoter-binding-like protein 3 isoform X2
STRINGXP_008810376.14e-40(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.21e-20squamosa promoter binding protein-like 8