PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929130.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARR-B
Protein Properties Length: 706aa    MW: 77238.7 Da    PI: 6.6268
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929130.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.72.6e-28215268155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  XP_010929130.1 215 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILDLMNVENLTRENVASHLQKYRL 268
                     79*******************.********************************8 PP
2Response_reg76.41.1e-25261341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll+ +l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +  G
  XP_010929130.1  26 VLAVDDDPTCLKLLEILLRRCQY-QVTTTNQAIMALKMLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETKTVMKGITHG 118
                     799********************.***************888888*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel++
  XP_010929130.1 119 ACDYLLKPVRIEELRN 134
                     **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.7E-1831706IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.2E-4223147No hitNo description
SuperFamilySSF521721.71E-3523146IPR011006CheY-like superfamily
SMARTSM004485.6E-3324136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.63125140IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.0E-2326135IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.74E-2727139No hitNo description
PROSITE profilePS5129412.495212271IPR017930Myb domain
SuperFamilySSF466896.27E-20212272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-30213273IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24215268IPR006447Myb domain, plants
PfamPF002491.0E-6217267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MTVEERKGSM GREGAPKDQF PVGMRVLAVD DDPTCLKLLE ILLRRCQYQV TTTNQAIMAL  60
KMLRENKDKF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANGETKT VMKGITHGAC  120
DYLLKPVRIE ELRNIWQHVV RRRKFDHRDH NNYDNAGDSE KPQCANSEGG QGHIPSESSD  180
YGGKLNRKRK EQNEDEEDDG QENMHENGDS STQKKPRVVW SVELHRKFVA AVNQLGIDKA  240
VPKRILDLMN VENLTRENVA SHLQKYRLYL KRLSAVASQQ ANMVAAFGGR DHSYLPMGPL  300
DGYGNFHTLA ASGQLPALSS FQANGVLSGT NPAGYGLREF AASRIVQPGH SHGNTSNPIN  360
DLGKLQRINL PGSQHGNLLQ GMPTTLEVDQ LQQHKTMQDA NIHLSGGFSG TGLTTGSSSN  420
SFVNVTNNSF VSQAHQQHMQ SKVLGNHSSV GMPSVTSDPF SVSVGGASHV PNLGRCNDTW  480
QGDVPLIGHA SNSFHHDDLA NMGANVPVGL HIDSNPLNIS SSNVVAAPLH NPVTGGDVQC  540
QASSFGGNMM LMPSALDGDS KFLNFGNAGI SKQKLKEPNR DHIREPNLVF NSYLNSPLSG  600
NPIIGPIAES QRLNNGHFNK KWDISQTNFV TPVPTQKCKI DNSTTNIQLT HKEESILETS  660
KSQGGFYSSG CSFDDLVNSM IKPERDDIAF MDNDIGCDFY PLGACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-25211274164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929130.10.0two-component response regulator ORR22
RefseqXP_019707776.10.0two-component response regulator ORR22
RefseqXP_019707777.10.0two-component response regulator ORR22
SwissprotB8B3I40.0ORR22_ORYSI; Two-component response regulator ORR22
TrEMBLA0A2H3Y7H10.0A0A2H3Y7H1_PHODC; two-component response regulator ORR23-like isoform X1
STRINGXP_008794326.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-124response regulator 12