PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929154.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 257aa    MW: 28679.2 Da    PI: 7.0478
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929154.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.4e-2996155159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK  k+++ pr+Y+rC++a +C+vkkkv+rs +d+++++ tYegeHnh+
  XP_010929154.1  96 VKDGYHWRKYGQKITKDNPSPRAYFRCSMApSCHVKKKVQRSPDDKSILVATYEGEHNHP 155
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-2987157IPR003657WRKY domain
PROSITE profilePS5081127.30191157IPR003657WRKY domain
SuperFamilySSF1182907.32E-2693157IPR003657WRKY domain
SMARTSM007742.1E-3296156IPR003657WRKY domain
PfamPF031061.5E-2497155IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDGQRNISEE EKIQEIGAEL ERLHAENKEL CLMLHTMNNK YTALQAHVEK IREEVDFMNE  60
SCSSHYLTKR RPIESIKPKS TRIFVRTNED STSLIVKDGY HWRKYGQKIT KDNPSPRAYF  120
RCSMAPSCHV KKKVQRSPDD KSILVATYEG EHNHPLPGEL DGMTSLPTTS STGLMAGTSS  180
SSTSRDLSQP TVTLDLALCG SNHEAARSTE TLKNDTNDNN KNIMEECITL LSGDPNFRVA  240
LAAAVARSII SNHPSNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20951571374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029122102.10.0probable WRKY transcription factor 40
RefseqXP_029122103.10.0probable WRKY transcription factor 40
TrEMBLA0A2H3Y7881e-137A0A2H3Y788_PHODC; probable WRKY transcription factor 40
STRINGXP_008794347.11e-138(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-50WRKY DNA-binding protein 40