PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010929161.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 537aa MW: 59589.3 Da PI: 4.9003

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010929161.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.6e-08	448	487	1	37
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtl 37 +++W+ E+e l +av+++G g+Wk I ++ + k Rt+ XP_010929161.1 448 KKKWSSLEEETLRKAVERHGVGNWKFIKSCHPeifKDRTE 487 689************************9998888888885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-8	444	487	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.09E-8	445	489	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-5	448	479	IPR001005	SANT/Myb domain
CDD	cd11660	1.17E-9	449	488	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MLDPRITSWI LEFVLRQPAE DWMANELLFA LPLPSPLSPR LKKILLLRRL SSDLSRPSLS 60 ARTLLSLELI EELERYAGAG APSNSLAAAY AAVAVECTTR FLRERSDDDH GEDFFDAVNR 120 IWNCRVADLE RSEAAGLFSP ALREARREME EAIVNPVVRV GLTGRDTKKA ALDAVRVYLE 180 EAEKEMGPPY LEHLAKAVCE EWMSSGTGRD GSVVELYEML RNLLASQGER GRYEGLPDGN 240 TAKSSGLLGF DNYEDSVLGR DKDAPEQGGC SSDEFVHLPA SASEVMKVKN LSQLGVLPAN 300 LDNMEENQNQ MDLKLVFSVN EGAGKGPNND DDAIARPNLM NQDPSDLEHV EENRERASLS 360 FVDKGTKDGN PGTTTCVGDK RDCAGAPKPS LMDWNPTART FEWDEDSIES PSENSPDPSN 420 KLHLPSAKRR EISLPLEDNK TFVKRRRKKK WSSLEEETLR KAVERHGVGN WKFIKSCHPE 480 IFKDRTEVYL IGMKKGNGSQ LLLSTCLLRT ACTPLILASL LNTSGVESLF SGMCPHL

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MLDPRITSWI LEFVLRQPAE DWMANELLFA LPLPSPLSPR LKKILLLRRL SSDLSRPSLS  60
ARTLLSLELI EELERYAGAG APSNSLAAAY AAVAVECTTR FLRERSDDDH GEDFFDAVNR  120
IWNCRVADLE RSEAAGLFSP ALREARREME EAIVNPVVRV GLTGRDTKKA ALDAVRVYLE  180
EAEKEMGPPY LEHLAKAVCE EWMSSGTGRD GSVVELYEML RNLLASQGER GRYEGLPDGN  240
TAKSSGLLGF DNYEDSVLGR DKDAPEQGGC SSDEFVHLPA SASEVMKVKN LSQLGVLPAN  300
LDNMEENQNQ MDLKLVFSVN EGAGKGPNND DDAIARPNLM NQDPSDLEHV EENRERASLS  360
FVDKGTKDGN PGTTTCVGDK RDCAGAPKPS LMDWNPTART FEWDEDSIES PSENSPDPSN  420
KLHLPSAKRR EISLPLEDNK TFVKRRRKKK WSSLEEETLR KAVERHGVGN WKFIKSCHPE  480
IFKDRTEVYL IGMKKGNGSQ LLLSTCLLRT ACTPLILASL LNTSGVESLF SGMCPHL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	427	449	KRREISLPLEDNKTFVKRRRKKK
2	443	449	KRRRKKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029123078.1	0.0	uncharacterized protein LOC105050727 isoform X2
TrEMBL	A0A2H3XWE6	0.0	A0A2H3XWE6_PHODC; uncharacterized protein LOC103707169 isoform X1
STRING	XP_008789777.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16050	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06910.1	8e-06	TRF-like 7