PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929242.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 133aa    MW: 14760.6 Da    PI: 8.3382
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929242.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-052648123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C k F ++  L  H++ H
  XP_010929242.1 26 FSCNYCQKKFYSSQALGGHQNAH 48
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.35E-72453No hitNo description
Gene3DG3DSA:3.30.160.602.6E-42451IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2812653IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEPENPELNL DLALQPSSPP EPARVFSCNY CQKKFYSSQA LGGHQNAHKL ERSLAKRSWE  60
LATALRPHAG STIGQHTSTV VLVERQREEC CYNGVGLATR GREASRASIR LGSRKESDDK  120
RELADGIDLS LRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929242.11e-94zinc finger protein 7
TrEMBLA0A2H3ZXZ86e-42A0A2H3ZXZ8_PHODC; uncharacterized protein LOC103718394
STRINGXP_008805413.16e-45(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-21zinc finger protein 2