PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929255.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 461aa    MW: 50801.5 Da    PI: 8.4145
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929255.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59e-15111170155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpse..ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d s    g  ++ ++++lg ++  e+Aa+a++ a++k++g
  XP_010929255.1 111 SIYRGVTRHRWTGRYEAHLWDNSYrrEGkrRKgRQVYLGGYDKDEKAARAYDLAALKYWG 170
                     57*******************655453466337*************************98 PP
2AP246.21.1e-14215266155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I         +k  +lg+f t eeAa+a++ a+ k++g
  XP_010929255.1 215 SIYRGVTRHHQHGRWQARIGR----AaGNKDLYLGTFSTQEEAAEAYDVAAIKFRG 266
                     57****************888....2346************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.87E-17111182No hitNo description
SuperFamilySSF541713.01E-15111181IPR016177DNA-binding domain
PfamPF008478.8E-13111170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-14112181IPR001471AP2/ERF domain
SMARTSM003803.3E-26112186IPR001471AP2/ERF domain
PROSITE profilePS5103218.848112180IPR001471AP2/ERF domain
PRINTSPR003671.9E-6113124IPR001471AP2/ERF domain
CDDcd000181.71E-23215276No hitNo description
SuperFamilySSF541714.64E-18215276IPR016177DNA-binding domain
PfamPF008472.4E-10215266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-18216274IPR001471AP2/ERF domain
SMARTSM003807.7E-32216280IPR001471AP2/ERF domain
PROSITE profilePS5103219.19216274IPR001471AP2/ERF domain
PRINTSPR003671.9E-6256276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDTSHNGFAF SPCNHQPQPY LFEALSSPLP HGGMAMTEED RRGTAELAAL ATVGLKLEEF  60
LGGCGMIYDS ELKNVASRFP RGPPGAGEQK DREAMTAVSR NAVDTFGQRT SIYRGVTRHR  120
WTGRYEAHLW DNSYRREGKR RKGRQVYLGG YDKDEKAARA YDLAALKYWG PSPTTTTNFP  180
ISDYEKELEE MKNMTRQGFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRAAGNK  240
DLYLGTFSTQ EEAAEAYDVA AIKFRGLNAM TNFDISCYDV KRIANGNLPI GRMMDRAFKA  300
SESWSSSSSG AMIVEAKRQV DCWDPWASVG FGGLPIKDDQ EFWSLFALQQ QQQQQQSNQA  360
TGFGLFSSGA AIDFSTTSNG VISQGSGGSL AWKNGVLEQQ QEQAQSGASC YSIPYATPIV  420
FGGNYEGSSY VGSLVTSPPS NYHQATQSSV AVFQTPMFGM E
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929255.20.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-125AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA9JQY70.0A9JQY7_ELAGV; AP2 protein
STRINGXP_008803593.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-122AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]