PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929342.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 234aa    MW: 26681.9 Da    PI: 5.0663
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929342.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.8e-1496141555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +  +Er+RR+++N+++  Lr+++P+      +K++Ka+i + A++YI++Lq
  XP_010929342.1  96 NIVMERNRRRKLNERLYALRSVVPNI-----TKMDKASIIKDAIDYIQELQ 141
                     5679*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.97791140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-1995156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.89E-1595145No hitNo description
PfamPF000102.3E-1196141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-1797146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1897156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDDMEAEYNF YWETKRFFES EELDRFSLSL HSYTIYTILH AFFPRPTPPP FYRSSKQQAI  60
KLSYCFSCGW GLDEALSGYY DSSSPENAAS STAAKNIVME RNRRRKLNER LYALRSVVPN  120
ITKMDKASII KDAIDYIQEL QEQERRMQAE ISELETVKEE QAPIGDTERD DVNFTQRKKK  180
RSSRGSPLAP GSPSSASIEL MDTDEMGSAQ LKMKIQGAIA ELDGSRSPGS SMSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-131001621379Transcription factor MYC2
5gnj_B2e-131001621379Transcription factor MYC2
5gnj_E2e-131001621379Transcription factor MYC2
5gnj_F2e-131001621379Transcription factor MYC2
5gnj_G2e-131001621379Transcription factor MYC2
5gnj_I2e-131001621379Transcription factor MYC2
5gnj_M2e-131001621379Transcription factor MYC2
5gnj_N2e-131001621379Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929342.11e-174transcription factor bHLH35 isoform X5
SwissprotQ2HIV92e-37BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2H3ZCF06e-90A0A2H3ZCF0_PHODC; transcription factor bHLH35 isoform X1
STRINGXP_008811438.19e-91(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.35e-30bHLH family protein