PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010929452.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 372aa MW: 39894.6 Da PI: 7.0253

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010929452.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	81	140	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ XP_010929452.1 81 QAALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 140 7789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	78	138	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-33	82	138	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	84	138	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	86	122	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MLCDGEKLRI PSTNERPQNM GEMLLIPGNN NSENNNTDTN NNKNASTATS NSSTSTNSNM 60 IHAAAAPSAA RVMDKPAQDH QAALKCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR 120 GGTLRNVPVG GGCRKNKRVK KPTSTAASDP LPSALMPPTN SVPPISLPNP ASHLDSPMNP 180 LFYSLPTASS SSGLAFSGLR APSVPHGISI PCTGFDLPQP QLNSLGLGFP SSQSQSQRDD 240 EFHLSQLQTS ASVMNDHPLF GSTAASLLLS SLRQPKKLED YQALMPYEEL HAASAEAIGN 300 LGVIKEVKLE GDSNAIDHNR IEWPIPLENS FDAIIPAAST SLAGDSSFLY WNSAIGAWPD 360 SAHCESSVAP LI

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MLCDGEKLRI PSTNERPQNM GEMLLIPGNN NSENNNTDTN NNKNASTATS NSSTSTNSNM  60
IHAAAAPSAA RVMDKPAQDH QAALKCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR  120
GGTLRNVPVG GGCRKNKRVK KPTSTAASDP LPSALMPPTN SVPPISLPNP ASHLDSPMNP  180
LFYSLPTASS SSGLAFSGLR APSVPHGISI PCTGFDLPQP QLNSLGLGFP SSQSQSQRDD  240
EFHLSQLQTS ASVMNDHPLF GSTAASLLLS SLRQPKKLED YQALMPYEEL HAASAEAIGN  300
LGVIKEVKLE GDSNAIDHNR IEWPIPLENS FDAIIPAAST SLAGDSSFLY WNSAIGAWPD  360
SAHCESSVAP LI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010929452.1	0.0	dof zinc finger protein DOF1.4 isoform X2
TrEMBL	A0A2H3X7M2	0.0	A0A2H3X7M2_PHODC; dof zinc finger protein DOF1.4-like
STRING	XP_008779534.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	2e-36	Dof family protein