PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010929614.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YC

Protein Properties

Length: 238aa MW: 27453 Da PI: 4.8857

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010929614.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	156.4	4.6e-49	71	172	2	100
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 l++fw +q i + dfknh+lP arikki+kadedv+mi+aeaPvl+s+ace+filelt rsw a+enkrrtl+k+dia avtrtd+fdflv XP_010929614.1 71 LQMFWVSQyqeILATIDFKNHSLPWARIKKIMKADEDVRMIAAEAPVLFSRACEMFILELTYRSWAYAQENKRRTLQKNDIAGAVTRTDVFDFLV 165 89**9965566789*************************************************************************** PP NF-YC 94 divprde 100 divp ++ XP_010929614.1 166 DIVPGED 172 **987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.09E-30	76	164	IPR009072	Histone-fold
Pfam	PF00808	6.5E-21	92	155	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.5E-35	93	169	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDDSGRRQLP VMSEVQVPNL AMPYQANQMM GSTAPVSSWQ LTTAFQAQFT QHRLSYQHIH 60 KQQLQQLDQT LQMFWVSQYQ EILATIDFKN HSLPWARIKK IMKADEDVRM IAAEAPVLFS 120 RACEMFILEL TYRSWAYAQE NKRRTLQKND IAGAVTRTDV FDFLVDIVPG EDLNEQVNAN 180 DSLSYDHVPP HVGTLGIIMS KPEVDQGLLY AQQPQSYMPQ QFWQQQQTTQ EQQPGEDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-52	76	169	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	148	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019705030.1	1e-178	nuclear transcription factor Y subunit C-3-like
Swissprot	Q9ZVL3	1e-60	NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBL	A0A2H3ZYK8	1e-107	A0A2H3ZYK8_PHODC; nuclear transcription factor Y subunit C-3-like
STRING	XP_008806484.1	1e-108	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	4e-59	nuclear factor Y, subunit C3

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714]