PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929728.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 681aa    MW: 75076.2 Da    PI: 6.0405
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929728.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS148.47.1e-463704981136
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+lLl+cAeav+++d   a+++L +l++ +sp gd+mqR+a++f+ ALaarl+ s s +  +lpp         ++l++++++++++P++kf+h
  XP_010929728.1 370 LVHLLLACAEAVAKDDYLTARRYLHHLNHVVSPIGDSMQRVASCFADALAARLSPSPSPMXPTLPPP-------LDTLKIYQILYQACPYVKFAH 457
                     68*****************************************************666665555444.......5669***************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                     +taNqaI ea+e+e+rvHi+D+di qG QWpa+lqaLa+R 
  XP_010929728.1 458 FTANQAIFEAFESEDRVHIVDLDILQGYQWPAFLQALADRL 498
                     ***************************************96 PP
2GRAS206.81.2e-63496680184374
            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     +rledl++++L+ + gEalaVn v +lhr++   ++      ++L+++++  Pk+v++ve+ea+hn++ Fl rfleal+yysalfdsl+a++p++
  XP_010929728.1 496 DRLEDLRPSMLHRRVGEALAVNAVCHLHRVP--GAH----LGQLLSMIRDQAPKIVTLVEKEASHNGPYFLGRFLEALHYYSALFDSLDATFPAD 584
                     789***************************9..333....446**************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     s +r+kvE+ ++++ei+n+va egaer++rhe+le+Wr+ +e  GFk v+ls + ++q + ll  ++ dgyr+ e++g ++lgW+dr+++++SaW
  XP_010929728.1 585 SAARAKVEQYIFAPEIKNIVASEGAERVARHERLERWRKVMEGRGFKGVALSANSVNQSRILLGLYACDGYRLTEDNGFMFLGWQDRAIIAASAW 679
                     *********************************************************************************************** PP

            GRAS 374 r 374
                     r
  XP_010929728.1 680 R 680
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.681344660IPR005202Transcription factor GRAS
PfamPF035144.2E-61496680IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MGSLKSNDIP TTNQQQPSSP TASVSESNAV ASSEPEPNNP TTFQGLKFDV DIDIEIQSPD  60
SSLWESLFAD QIDSGTDFII SSPRRDYMIF SPRRDYMISS PKRDYMISSP RRDYMISSPK  120
RDYMVSSPKR DCLISSPKRD FMVSSPKIDY MVSSPKRESM VSSPRRTGLN SLYSHYSNYG  180
YVHGMHGLHG CTSPSYNSSN HGKGKSQSPL HKGVNSSSSP YSSSTQVVHG ECLALPAMDA  240
FLDEYGRENY STYTSSLKST GGIECSSEAF EMTPTATLPS LLDCLTMESR YGDAVGETDT  300
GLQISGDGGL YQMNQFGVGG AAQQQGRDID HGLLGSVGKT ELVEASYHGL LGGPIIPSES  360
EQEQDSGLQL VHLLLACAEA VAKDDYLTAR RYLHHLNHVV SPIGDSMQRV ASCFADALAA  420
RLSPSPSPMX PTLPPPLDTL KIYQILYQAC PYVKFAHFTA NQAIFEAFES EDRVHIVDLD  480
ILQGYQWPAF LQALADRLED LRPSMLHRRV GEALAVNAVC HLHRVPGAHL GQLLSMIRDQ  540
APKIVTLVEK EASHNGPYFL GRFLEALHYY SALFDSLDAT FPADSAARAK VEQYIFAPEI  600
KNIVASEGAE RVARHERLER WRKVMEGRGF KGVALSANSV NQSRILLGLY ACDGYRLTED  660
NGFMFLGWQD RAIIAASAWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-733536791377Protein SCARECROW
5b3h_D5e-733536791377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019708465.10.0LOW QUALITY PROTEIN: DELLA protein GAIP-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A3Q0I5S50.0A0A3Q0I5S5_PHODC; DELLA protein RGL1-like
STRINGXP_008791129.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-78RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]