PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929883.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 489aa    MW: 53529.4 Da    PI: 5.9008
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929883.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17172221155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_010929883.1 172 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 221
                     78*******************......55************************997 PP
2AP242.12.1e-13264314155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  XP_010929883.1 264 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 314
                     89********.7******5553..2.26**********99**********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.95E-11172231No hitNo description
SuperFamilySSF541716.28E-16172231IPR016177DNA-binding domain
PfamPF008473.2E-9172221IPR001471AP2/ERF domain
PROSITE profilePS5103217.754173229IPR001471AP2/ERF domain
SMARTSM003808.5E-31173235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-17173230IPR001471AP2/ERF domain
CDDcd000187.21E-24264324No hitNo description
PfamPF008473.8E-9264314IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-16264323IPR016177DNA-binding domain
SMARTSM003801.2E-30265328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-15265322IPR001471AP2/ERF domain
PROSITE profilePS5103215.224265322IPR001471AP2/ERF domain
PRINTSPR003678.0E-6266277IPR001471AP2/ERF domain
PRINTSPR003678.0E-6304324IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MVLDLNVASP GESSSSGEEK VLMEEGSGGW PMEESGNSNS SVLNVDACSN ACDDDFCSTP  60
FAAHDVGGGF NFGILKSCLA ADGEEELEED LEEEDGASVE AGFVTRQLFP PVVAVQESVQ  120
PSVMVSSSAP AMPRGMELSF LQCNTAGSTE AKALQQKQQA KKTRRGPRSR SSQYRGVTFY  180
RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GIDADINFNL SYYEEDLKQM  240
RNLTKEEFVH ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEIE  300
AARAYDKAAI KCNGMEAVTN FEPSTYDGEI RPEPDDEVEA AGNNIDLDLR LSQPNVHSHK  360
KNNNSMDIQL SCSSFEASDA RNFRADNPTS HLAHHHHLPI APEHPHAWTA LCPGFFPHVE  420
ERATKGCELG LSAVTNRAWS MHGPTLPLSS AASSGFSTTA TVAVAHHPSP SAAHRNFPPS  480
AAVDYYCRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929883.10.0APETALA2-like protein 2 isoform X2
SwissprotQ8H4431e-126AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A2H3YQF30.0A0A2H3YQF3_PHODC; floral homeotic protein APETALA 2-like
STRINGXP_008802331.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-94related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]