PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930052.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 408aa    MW: 46585.2 Da    PI: 5.9473
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930052.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.91e-2694175286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li +rrem+  ++++k++k+lWe++s+km+++gf rsp++C++kw+nl k++kk k+++k+  s+++ +++y+++l+
  XP_010930052.1  94 WVQEETRSLISLRREMDGLFNTSKSNKHLWEQISAKMKDKGFDRSPTMCTDKWRNLLKEFKKAKHHAKG--SGAV-KMSYYKELD 175
                     ********************************************************************8..4665.799***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.83886150IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-587152IPR009057Homeodomain-like
SMARTSM007172.6E-590152IPR001005SANT/Myb domain
CDDcd122036.78E-2992157No hitNo description
PfamPF138374.0E-2193177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSLPTLDQYL SQSLLPCFRS REDESDEEQQ GARKSMYLSD KPQSVDYYKE DSRDMMIQVV  60
GNGGLPPPQQ QMILAESSGE DHEVKAPKKR AETWVQEETR SLISLRREMD GLFNTSKSNK  120
HLWEQISAKM KDKGFDRSPT MCTDKWRNLL KEFKKAKHHA KGSGAVKMSY YKELDEMLKE  180
RNKNPAYKSP TVSKVDSYLQ FSDKGLEDAN ISFGPVEGSG RSTLNMDRRL DHERHPLAIT  240
AADEVAANGV PPWNWRDTPA NGGDNHTSYG GRVILVKWGD YTRKIGIDGS AEAIKDAIKS  300
AFGIRTRRAF WLEDEDEVVR SLDRDMPLGT YTLHLDDGIT IKICIYDETD RITVRTEEKT  360
IYTQEDFRDF LNRNGWTGLR ELSGFRSVDT MDDLRPGAVY QGIRLLSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A9e-4888173186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930052.10.0trihelix transcription factor GT-1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A3Q0I2M70.0A0A3Q0I2M7_PHODC; trihelix transcription factor GT-1-like
STRINGXP_008792161.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-180Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]