PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930053.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 395aa    MW: 45255.8 Da    PI: 6.5314
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930053.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix859.4e-2794175286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li +rrem+  ++++k++k+lWe++s+km+++gf rsp++C++kw+nl k++kk k+++k+  s+++ +++y+++l+
  XP_010930053.1  94 WVQEETRSLISLRREMDGLFNTSKSNKHLWEQISAKMKDKGFDRSPTMCTDKWRNLLKEFKKAKHHAKG--SGAV-KMSYYKELD 175
                     ********************************************************************8..4665.799***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.83886150IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-587152IPR009057Homeodomain-like
SMARTSM007172.6E-590152IPR001005SANT/Myb domain
CDDcd122031.23E-2892157No hitNo description
PfamPF138373.8E-2193177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSLPTLDQYL SQSLLPCFRS REDESDEEQQ GARKSMYLSD KPQSVDYYKE DSRDMMIQVV  60
GNGGLPPPQQ QMILAESSGE DHEVKAPKKR AETWVQEETR SLISLRREMD GLFNTSKSNK  120
HLWEQISAKM KDKGFDRSPT MCTDKWRNLL KEFKKAKHHA KGSGAVKMSY YKELDEMLKE  180
RNKNPAYKSP TVSKVDSYLQ FSDKGSGRST LNMDRRLDHE RHPLAITAAD EVAANGVPPW  240
NWRDTPANGG DNHTSYGGRV ILVKWGDYTR KIGIDGSAEA IKDAIKSAFG IRTRRAFWLE  300
DEDEVVRSLD RDMPLGTYTL HLDDGITIKI CIYDETDRIT VRTEEKTIYT QEDFRDFLNR  360
NGWTGLRELS GFRSVDTMDD LRPGAVYQGI RLLSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A8e-4888173186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930052.10.0trihelix transcription factor GT-1
SwissprotQ9FX531e-174TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A3Q0I2M70.0A0A3Q0I2M7_PHODC; trihelix transcription factor GT-1-like
STRINGXP_008792161.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-171Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]