PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930158.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 721aa    MW: 77158.7 Da    PI: 6.4393
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930158.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.58.9e-15301360155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_010930158.1 301 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 360
                     57*******************666664478446*************************98 PP
2AP245.81.5e-14405454355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010930158.1 405 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 454
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-22301370No hitNo description
SuperFamilySSF541713.47E-17301370IPR016177DNA-binding domain
PfamPF008471.4E-11301360IPR001471AP2/ERF domain
PROSITE profilePS5103219.164302368IPR001471AP2/ERF domain
SMARTSM003802.0E-29302374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-15302369IPR001471AP2/ERF domain
PRINTSPR003673.9E-6303314IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17403464IPR016177DNA-binding domain
CDDcd000183.02E-24403464No hitNo description
SMARTSM003807.1E-33404468IPR001471AP2/ERF domain
PROSITE profilePS5103219.203404462IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-18404463IPR001471AP2/ERF domain
PfamPF008472.1E-9405454IPR001471AP2/ERF domain
PRINTSPR003673.9E-6444464IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MASMNNWLGF SLSPQELPHS QPHQSPTLIS GDEVSADCYG LSTDTTSAPP LGIPTLRPDG  60
PFGILEALHR PNSQPQDWSM KSLDFKGSSS ELSMLVGSSS NQKNMDDHEP KLEDFLGGHS  120
FADHDQKLPP GCSSIPGPYD NSGDYMFSNC SLQLPAAAAM ASNDANNGGL VNNNGAGGSG  180
NTIGLSMIKT WLRNQPAPPQ QPEGSNNNNN DSAGTGNCGG GALVGSVGGP MASSQSLSLS  240
MSTGSQSSSA LPLLAAAASG GGESSSSENK HKGIGSGLDG QGGAIEATPR KSIDTFGQRT  300
SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG  360
TTTTTNFPIS NYEKELEEMK HMTRQEYVAS LRRKSSGFSR GASMYRGVTR HHQHGRWQAR  420
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS ILESSTLPIG  480
GAAKRLKDVS EHTEASVDGR RTDDDNLASQ LTDGISSYGS HVHHHGWPPM AYQQAQPLAM  540
HYPYGQQRGW CKQEQDSVIA MHLASNTHNF FQPSGIHSLM SMDSSPMEHS TGSNSVIYNG  600
SMGGSSGGYQ GVVGGSDGYV MPLSTMVVDQ SQNNQGSSSF GDNEGKAMGY ENMLGSTDPY  660
GSRSVYYLSQ QSSGGVVKEN GYDQSSGCNT WMQPSVQAMA PRANNVGVCH GAPLFTVWND  720
A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930158.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2H3YUT00.0A0A2H3YUT0_PHODC; AP2-like ethylene-responsive transcription factor BBM2
STRINGXP_008804192.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-128AP2 family protein