PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930280.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 865aa    MW: 98892.4 Da    PI: 6.9591
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930280.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.25.4e-18103187191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY++YA +vGF v ++ks+ + ++g + +  + Cs+ g+ +++        + r++ +t+C+a++++k++ dg  ++++ +leHnH+l+p
  XP_010930280.1 103 NFYKQYALHVGFGVAVRKSQFT-KSGVCRRLILACSRAGRGRQDACY-----QARQTAKTNCQAMIVLKLWGDGLLHLAEANLEHNHPLSP 187
                     6****************99998.8888****************9999.....89999*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.8E-16103187IPR004330FAR1 DNA binding domain
PfamPF105516.4E-34286380IPR018289MULE transposase domain
PROSITE profilePS509668.864573609IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-4580605IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-4584611IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MADECVREVP LNVDTDINEG KDAGLNGNNA APADDRTSQE LLNVSPTKGS LLGEDKEVTV  60
EYNVHDVDKK DNAELEEDRK AVGGDDKTPR VGMIFKSYDE VSNFYKQYAL HVGFGVAVRK  120
SQFTKSGVCR RLILACSRAG RGRQDACYQA RQTAKTNCQA MIVLKLWGDG LLHLAEANLE  180
HNHPLSPSTA RFLSCYKKMT DVMAEGPTAR PNGHRNIQSE NRNSNKIGRL KLGEGDDESI  240
CQFFSGMQNK NPNFFYLVDF EKHGHLRNLF WADARSRAAY QYFGDVISFD TTYLTEKYDL  300
PLVLFIGMNH HGQSVLLGCG LVSDETIETY IWLFKAFLTC MLGCCPNAII TDHCMAIQGA  360
VAEVFPGVRH RLCMFHIMKK IPEELKGFAD FKAVKKAVKK AAYDSLRVNE FEEEWKKMIE  420
RHELEGNEWL DSLYENRNMW VPAYLKDVFW AGMSISQRGE TVTAFFDGCL YPRTSIKHFL  480
SKYEMILQSK YKKEAQADSE SFHKTPLTIS KFYMEEQLSK LYTVSMFRKF QDELKATMYC  540
DVSPIKVDGS LVTFEVRECS YMEDGKRTEK KDHEVLYDAD KLQVQCICGS FQFRGILCRH  600
TLSVFKLQQV FEIPSHYILD RWKKDYKRLH ALAHPSHDML TDNIMERYDY LSMRCLHLAE  660
LGFMSDDRYQ VALKLIREME KSLLDNGLCR DRQPMLLSFE MQSHENVQNL LVSQLGISEG  720
NKNSNSLQVK RRGRPPKKGR EPQVDLSVRS SKEQDFLRSS LVGNENNVLQ SAPLASHLDA  780
PIGTQGGIDL MEEVPPDDLS FGSHFSIHVN HQHHMGNHTR LQSSNLLQGQ YDHQTVGSQS  840
RVQWIYQQML QEDQMPNAHS GRRTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029122422.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLA0A2H3YM680.0A0A2H3YM68_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRINGXP_008800847.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-140FAR1-related sequence 6