PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930310.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 206aa    MW: 22555.5 Da    PI: 9.1201
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930310.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26055.22e-17321321101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+C + rr+C +dC++a++fp e+p  +  +   +G +   ++l  l++e+   a++slvy+A   +r   + a+++i +lq+q+  l++  +
  XP_010930310.1  32 PCAVCEHPRRRCRRDCPFARHFPGERPTCLDSLCLAYGPQLAARMLGVLNRERWIPAANSLVYNAILHLRHRENEAFEIIARLQNQVVDLQVSNS 126
                     7********************************************************************************************99 PP

          DUF260  96 llkeel 101
                     ll++++
  XP_010930310.1 127 LLRHQI 132
                     999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.78231132IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-1532128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSNITTESSM ESSPPPPPPP PPPPPPVRHR APCAVCEHPR RRCRRDCPFA RHFPGERPTC  60
LDSLCLAYGP QLAARMLGVL NRERWIPAAN SLVYNAILHL RHRENEAFEI IARLQNQVVD  120
LQVSNSLLRH QIAARERTRQ RPPSIYDLIE WPTNDGLAGV NEPAGGGRPP ASGPGEGSSM  180
PSGGQHGAPS SSEYNNRPRI GPPKSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930309.11e-147LOB domain-containing protein 11
STRINGXP_008801115.11e-50(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.11e-07LOB domain-containing protein 13