PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930351.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 682aa    MW: 76558.6 Da    PI: 8.765
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930351.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.22.1e-2698186289
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     f+++YA++vGF++r+sks +s+ ++++++r+fvCsk+g++++++    +k+rr+ra++r gCka+l+v+++++g w v+++ leH H+l
  XP_010930351.1  98 FFSAYAERVGFRIRNSKSFTSRVDDTVIMRRFVCSKQGRPTKKDPFdLTKKRRNRASSREGCKAMLQVNRRENGLWAVSRCALEHCHPL 186
                     9**************************************99887655899*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-2498186IPR004330FAR1 DNA binding domain
PfamPF105511.6E-21277367IPR018289MULE transposase domain
PfamPF044349.3E-7544584IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.249556592IPR007527Zinc finger, SWIM-type
SMARTSM005759.2E-4567594IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MENITTLTPS MGFDSPHEGE VESLIPIQPQ GEGMAVESMV PSSGAMLLAA RPEDPVGGEG  60
RELVPTAGGL EASAGPSGDS EEPRLGMEFD SPDAARAFFS AYAERVGFRI RNSKSFTSRV  120
DDTVIMRRFV CSKQGRPTKK DPFDLTKKRR NRASSREGCK AMLQVNRREN GLWAVSRCAL  180
EHCHPLGIAP KASPAVQKKL AKKPWELLVS PPTETQQSGL GPGGGVAQSL LEYFKRMQAE  240
NPAFFYAIQV DQNNCVANVF WADARARMAY GYFGDAIMFD MTCKKNKRVV PFAAFTGVNH  300
HRQLIVFGCA FMTDESEASF TWLFETWLAL MSGRRPVSIT TAYNDAMGAA STKVFLNVRH  360
RFCRRDIFHK CKEKLSNVYL AHPSFKAEFK KCVSDSENIE EFESCWKLIM DRYNLKENMW  420
LQSLYDIRQK WVPAYARSTF FAELSGAPKL ETMHKFFQRH SITTTSLRDL VTQFDKAMAG  480
QYEKEIQADF ATTHNRPVLK TPSPLEKQAS EIYTKTIFDL LQEELVESSG FLMDKIEDGV  540
VSKFRVTKVD DASKVYMVNY NASEKSISCS CCKFEFSGIL CRHAFRVSVV VGILTFPEGY  600
ILRRWTRNAK SSILSYDHCG VLQTNCHKAV TWRCNDLCRD AIRFAEEGAT SAVIYKVAKG  660
ALQKAFAEVF AAKRGSSFNG TR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930351.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_029122440.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2I0W9790.0A0A2I0W979_9ASPA; Protein FAR1-RELATED SEQUENCE 5
STRINGORGLA11G0071600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-163FAR1-related sequence 5