PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010930461.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 820aa MW: 93479.7 Da PI: 8.4095

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010930461.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.1	1.1e-16	50	133	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY++YA++vGF v++++s+ + ++g++ +++C k g++++e k r+r++ t+C ak++vk++ dg +++ +l+HnH+++ XP_010930461.1 50 KFYKRYARRVGFGVSVRRSSFT-KEGQCLYLELMCCKGGRTRPEPKF-----RKRTSATTNCPAKIRVKLWGDGLLHLELGNLDHNHPVS 133 6***************9998.6677************9998.....99999****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-15	50	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-31	255	348	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.951	546	578	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-5	553	574	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-4	553	580	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence Send to blast
MAGDGAMDGG VGHAEGMEDD ELYGDNATEG GYDGVPEVGM VFKTHQEVSK FYKRYARRVG 60 FGVSVRRSSF TKEGQCLYLE LMCCKGGRTR PEPKFRKRTS ATTNCPAKIR VKLWGDGLLH 120 LELGNLDHNH PVSPSMARFL SCYKQLGAAK KRGSKHMNDD GALVQPEELS QFPVDSLGAL 180 EELLFSESEH RSFVERGQLR LGEGDAEALR LFFTRMQAKN SNFFNVIDLD EEGCVRNVFW 240 ADARSRAAYE YYNDVVALDT TYVTNKYDLP LATFVGVNHH GQPVLLGCSL LSDETIETYV 300 WLLKAWIACM SGHLPKALIS DHCKGIQSAV SEVLPGIHHR LCLWQMMKRV PEKLGGLAEY 360 RAINKAMQKA VYDSLTVDEF EEDWRMMIEI YGLQGNEWLR SLYECRHTWA PVYLKDTFWA 420 GMSTTQRSEN MNTFFDGYID AKTSLKQFFC KYEMALQSKY EKEAQADFET FHKRRPSVSK 480 FYMEEQLSKV YTLNMFKKFQ DEIEAIMYCH ASLVKSDGPV STFNVKECIF LDDGKRTINR 540 NHGVLYNTEQ KEVQCICGSF QFRGILCRHA LSVFKLQQVH EIPSQYILDR WKKDFKRLHV 600 MAHSSNDVVA NNRVDRYDYL SMRCLQLVEV GVLSDKYRLA LKLIREMEKF LLSDSTHDDT 660 QPKIKPRLPK TKRLNQNINQ SVGKIVAPEN GNEMRRRGWP PQTKESQASL GTSKEGVNPQ 720 VFPTGSQFGV PRHHPQYIGH QAAMRPSIVY MFPGGFDPQT FGNGPMMPWI YQQMFQAAQK 780 PKESPGPSAG QPPRKRKIYR GHKPVEGTQE PKEHSAPAAG

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence Send to blast

MAGDGAMDGG VGHAEGMEDD ELYGDNATEG GYDGVPEVGM VFKTHQEVSK FYKRYARRVG  60
FGVSVRRSSF TKEGQCLYLE LMCCKGGRTR PEPKFRKRTS ATTNCPAKIR VKLWGDGLLH  120
LELGNLDHNH PVSPSMARFL SCYKQLGAAK KRGSKHMNDD GALVQPEELS QFPVDSLGAL  180
EELLFSESEH RSFVERGQLR LGEGDAEALR LFFTRMQAKN SNFFNVIDLD EEGCVRNVFW  240
ADARSRAAYE YYNDVVALDT TYVTNKYDLP LATFVGVNHH GQPVLLGCSL LSDETIETYV  300
WLLKAWIACM SGHLPKALIS DHCKGIQSAV SEVLPGIHHR LCLWQMMKRV PEKLGGLAEY  360
RAINKAMQKA VYDSLTVDEF EEDWRMMIEI YGLQGNEWLR SLYECRHTWA PVYLKDTFWA  420
GMSTTQRSEN MNTFFDGYID AKTSLKQFFC KYEMALQSKY EKEAQADFET FHKRRPSVSK  480
FYMEEQLSKV YTLNMFKKFQ DEIEAIMYCH ASLVKSDGPV STFNVKECIF LDDGKRTINR  540
NHGVLYNTEQ KEVQCICGSF QFRGILCRHA LSVFKLQQVH EIPSQYILDR WKKDFKRLHV  600
MAHSSNDVVA NNRVDRYDYL SMRCLQLVEV GVLSDKYRLA LKLIREMEKF LLSDSTHDDT  660
QPKIKPRLPK TKRLNQNINQ SVGKIVAPEN GNEMRRRGWP PQTKESQASL GTSKEGVNPQ  720
VFPTGSQFGV PRHHPQYIGH QAAMRPSIVY MFPGGFDPQT FGNGPMMPWI YQQMFQAAQK  780
PKESPGPSAG QPPRKRKIYR GHKPVEGTQE PKEHSAPAAG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019708295.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X1
Refseq	XP_019708296.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X1
Refseq	XP_029122423.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBL	A0A2H3YMA0	0.0	A0A2H3YMA0_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRING	XP_008800885.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-143	FAR1-related sequence 6