PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930464.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LBD
Protein Properties Length: 220aa    MW: 23487.6 Da    PI: 9.07
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930464.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.16.3e-38281271100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaC+  rr+C++dCv+ap+fp +q++kf nvh+++G+snv kll++l++++r +a++sl+yeAe+r+r+Pv G+vg+i+ l+++l+ l+ +l+
  XP_010930464.1  28 PCAACRQSRRRCQPDCVFAPVFPPNQSQKFMNVHRVYGMSNVGKLLAELQPHQRAAAAESLAYEAEMRLRNPVLGCVGIITLLRRHLQGLQLQLE 122
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     ++k+e
  XP_010930464.1 123 AAKAE 127
                     99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.1627128IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-3728125IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSIHNVQGSP VSSVTSTDSP PQQAARPPCA ACRQSRRRCQ PDCVFAPVFP PNQSQKFMNV  60
HRVYGMSNVG KLLAELQPHQ RAAAAESLAY EAEMRLRNPV LGCVGIITLL RRHLQGLQLQ  120
LEAAKAELSQ YQHMSNGGLR HGVVGGGGGG GGMQGVMNDE AGEHWEQKRM VMGHDDQAVM  180
ASTQQGAVMN ASAMRNNQSN GQIAGPNGAR VDGPNRLLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-412813911122LOB family transfactor Ramosa2.1
5ly0_B5e-412813911122LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930464.11e-161LOB domain-containing protein 25-like
TrEMBLA0A443NSI23e-47A0A443NSI2_9MAGN; LOB domain-containing protein 6-like protein
STRINGXP_008802098.13e-57(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1968178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.41e-22LBD family protein