PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010930472.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 348aa MW: 40319 Da PI: 7.7322

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010930472.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.8	1e-24	76	163	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYneYA+++GFs+rk+++++s ++gei+ r+fvC+keg+ + + + ++++ r+ rtgC+a++ +k+ k+gk++v++++ eHnH+la XP_010930472.1 76 QFYNEYARRIGFSIRKQNMTRS-KSGEIKLRRFVCYKEGYYKGSPFD-KDAKFLRTDVRTGCNAHIGIKRLKNGKFCVHRFQPEHNHKLA 163 6*****************99.7888************9999.99999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-22	76	163	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-15	284	345	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MDDTEQAGNA GEAKDVENEH QKDRGEKVDD QNQVENADPQ HDENGKEKEQ SLNDILKENF 60 EPKVGMLFDS DEQAYQFYNE YARRIGFSIR KQNMTRSKSG EIKLRRFVCY KEGYYKGSPF 120 DKDAKFLRTD VRTGCNAHIG IKRLKNGKFC VHRFQPEHNH KLASSKKVHL LRSQREWNDS 180 QRSRAHVMTA GVNSLSTSDF LFNTSEGHKT LPFTPSGFQN YLHGLRQHEM KLGDAGAITH 240 YLQKKAAEDQ QFYSAIQLDM KDQITNVFWT DARSKFDYEH FGDVVCFDTS YKINDYGRPF 300 AQFMGVNNHK QTVILGAALL YDDTMETFKW LFTTFQEAMN GKAPRLRI

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MDDTEQAGNA GEAKDVENEH QKDRGEKVDD QNQVENADPQ HDENGKEKEQ SLNDILKENF  60
EPKVGMLFDS DEQAYQFYNE YARRIGFSIR KQNMTRSKSG EIKLRRFVCY KEGYYKGSPF  120
DKDAKFLRTD VRTGCNAHIG IKRLKNGKFC VHRFQPEHNH KLASSKKVHL LRSQREWNDS  180
QRSRAHVMTA GVNSLSTSDF LFNTSEGHKT LPFTPSGFQN YLHGLRQHEM KLGDAGAITH  240
YLQKKAAEDQ QFYSAIQLDM KDQITNVFWT DARSKFDYEH FGDVVCFDTS YKINDYGRPF  300
AQFMGVNNHK QTVILGAALL YDDTMETFKW LFTTFQEAMN GKAPRLRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930472.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A2H3XNU4	0.0	A0A2H3XNU4_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008786389.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-54	FAR1-related sequence 5