PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010930749.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 813aa MW: 94047.7 Da PI: 7.6838

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010930749.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.5	2.5e-24	35	122	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+Y+k vGFsvrk+ +++ +g i++rt+vC+keg++ ++k++ ++ +++r+++rtgC a+l++k + +g+++v++++ HnHel+ XP_010930749.1 35 QFYNHYSKVVGFSVRKAWINRR-ASGVIISRTYVCYKEGYQGNRKDE-SEVKKPRQNERTGCLAHLTIKITANGTYRVSEFHPMHNHELV 122 6**************99986.9999*************999.9999**********************************97 PP
2	FAR1	82.1	9.6e-26	195	284	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk++GF+vrk+ +++ +g i++rt+vC+keg+ ++k++ +++++r r+++rtgC a++++k+ k+g+++vt+++ HnHe++ XP_010930749.1 195 QFYNDYAKRIGFDVRKAWVNRR-SSGVIISRTYVCYKEGYYGNKKDEtQVEKHRIRPNERTGCLARMVIKLAKNGRYRVTEFQPMHNHEFV 284 6**************99886.8999********9887777646788899********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-22	35	122	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.3E-23	195	284	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-31	407	500	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.804	674	721	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-4	696	723	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	4.7E-5	696	718	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence Send to blast
MAELAEPDPL SGDADDTSWV PRVDMEFKSD EEAYQFYNHY SKVVGFSVRK AWINRRASGV 60 IISRTYVCYK EGYQGNRKDE SEVKKPRQNE RTGCLAHLTI KITANGTYRV SEFHPMHNHE 120 LVAPAKAHTL KSHRVAKKAR AVIANAASQK AMMECLVRQA GGYRQVTFFS VEDAADKSWA 180 PKVDMEFEND EKAYQFYNDY AKRIGFDVRK AWVNRRSSGV IISRTYVCYK EGYYGNKKDE 240 TQVEKHRIRP NERTGCLARM VIKLAKNGRY RVTEFQPMHN HEFVTARTAH TLKSHRAANK 300 IRNVEVNSVD DSSVAAKAIH DHASGQDASS QHLTFLSMEY KNYLPVKRKD AIKPGDVGAM 360 LEYMQERQVN DPSFYYAIQL DEEDRVTNVF WTDGKSMADY YYFGDAVCFD TTYKTNSCSR 420 PFSPFYGVNH HKQIVIFGAA LIYDETKESF RWLFETFKTA MYGKQPRVIL TDQNPLIRNA 480 INLVWPCTTH RVCVWHMYQN ASKYLGQVFQ GSRTFAYDFS RCLFDYEEEE EFVSAWENML 540 EKYDLKGNEW LKMLFEDREK WAVAYGRETF CADMKSTQRL DSISGMLKEY LSPERDLLQF 600 LKHFERMLDE QRNAELQADF HATPSISIIA PSRMLRQAAS EYTPAVFEMF QREFEMSMDC 660 MVHNSGAVET IYEYKVISEE NPKVHLVRFD SLNGTLVCSC KKFEFVGIQC RHVLKALDII 720 NIKELPPQYY LKRWKKDAKV GSLRDNLGLA TDIDPSSSKA MRLSSLCRII SIVAARAAET 780 VEGYTFVQNQ SDQLFDHVCE ILQARPPEEL QIS

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence Send to blast

MAELAEPDPL SGDADDTSWV PRVDMEFKSD EEAYQFYNHY SKVVGFSVRK AWINRRASGV  60
IISRTYVCYK EGYQGNRKDE SEVKKPRQNE RTGCLAHLTI KITANGTYRV SEFHPMHNHE  120
LVAPAKAHTL KSHRVAKKAR AVIANAASQK AMMECLVRQA GGYRQVTFFS VEDAADKSWA  180
PKVDMEFEND EKAYQFYNDY AKRIGFDVRK AWVNRRSSGV IISRTYVCYK EGYYGNKKDE  240
TQVEKHRIRP NERTGCLARM VIKLAKNGRY RVTEFQPMHN HEFVTARTAH TLKSHRAANK  300
IRNVEVNSVD DSSVAAKAIH DHASGQDASS QHLTFLSMEY KNYLPVKRKD AIKPGDVGAM  360
LEYMQERQVN DPSFYYAIQL DEEDRVTNVF WTDGKSMADY YYFGDAVCFD TTYKTNSCSR  420
PFSPFYGVNH HKQIVIFGAA LIYDETKESF RWLFETFKTA MYGKQPRVIL TDQNPLIRNA  480
INLVWPCTTH RVCVWHMYQN ASKYLGQVFQ GSRTFAYDFS RCLFDYEEEE EFVSAWENML  540
EKYDLKGNEW LKMLFEDREK WAVAYGRETF CADMKSTQRL DSISGMLKEY LSPERDLLQF  600
LKHFERMLDE QRNAELQADF HATPSISIIA PSRMLRQAAS EYTPAVFEMF QREFEMSMDC  660
MVHNSGAVET IYEYKVISEE NPKVHLVRFD SLNGTLVCSC KKFEFVGIQC RHVLKALDII  720
NIKELPPQYY LKRWKKDAKV GSLRDNLGLA TDIDPSSSKA MRLSSLCRII SIVAARAAET  780
VEGYTFVQNQ SDQLFDHVCE ILQARPPEEL QIS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930749.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3Q0HU82	0.0	A0A3Q0HU82_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_008781580.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-125	FAR1-related sequence 5