PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930823.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 508aa    MW: 56186.4 Da    PI: 5.6613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930823.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-06261282223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++C k F+r+ nL+ H+r H
  XP_010930823.1 261 FCSICQKGFKRSANLRMHMRGH 282
                     6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-5259284No hitNo description
SMARTSM003550.0037260282IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.302260287IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-6262282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
SMARTSM0035570309342IPR015880Zinc finger, C2H2-like
SMARTSM0035520347369IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDRERMPIFE ASSSMSYPSE DTNSNPLFTQ FDPKILSYGA GSEQSVSKFP QNLDSLSIWS  60
SHAEKVDKPP DQVASFSDNQ TNPTVDWDPR SMLSNLIFID QKIHQVQDII RSTIDIEGQS  120
SNQPNEVTMK QQLVTADLAC IISQLISTAG YLLPSVNSTL MSDIPPVGRM GGTIASTSSI  180
ALNDTLQQNK DFASERNKAI QHNDSIKSLT HTGDEGIKPV AMKHHDAKDH KDSENGENLP  240
LGSYEVLEPK KEEILAPHTH FCSICQKGFK RSANLRMHMR GHGDEYKSPA ALAKPSNEAS  300
LESMALKRYS CPFIGCKRNK EHEKFQPLKT ILCVKNHYKR SHCDKSYTCS RCNTKKFSVL  360
ADLKTHEKHC GRDRWLCSCG TTFSRKDKLL GHINLFPGHS PAISVDDVKA SGVTDQGRNS  420
ETMSEIGSLG SNFLGNSMDD VDDLDLEDVD DDPSSFSSGD FGSFSFGNLD DIPQQSFDAS  480
ESLFSYFPSG SCDYVQNNGD NSNLNHLG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930823.10.0zinc finger protein STOP1 homolog
SwissprotQ943I61e-171STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2H3XBY90.0A0A2H3XBY9_PHODC; zinc finger protein STOP1 homolog
STRINGXP_008781514.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-135C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]