PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930928.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 544aa    MW: 59301.3 Da    PI: 7.1096
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930928.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3665.4e-21119220199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+ltpsd+++ g +++p+  ae++         ++ +   lt++d++g++W++++i+r+ + r++lt+GW++F +a++L +gD +vF   +++
  XP_010930928.1 119 FVKALTPSDANNGGGFSMPRFGAESIfppldmaAVPPVQ--NLTIRDLHGKVWTFRHIFRGVPPRHLLTTGWSRFSDAKKLVAGDALVFI--KKR 209
                     89****************************996444445..6************************************************..446 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+v+++r+
  XP_010930928.1 210 DHQLYVGIRRA 220
                     6677****997 PP
2Auxin_resp78.22e-26274352683
      Auxin_resp   6 stksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     +++ +Fevv++P as+++Fvv vekv++al+v++ vGmR++m++e e ss++r+ +Gtv+ +++ d+ rW+ S+Wr+L+
  XP_010930928.1 274 RMGRPFEVVHYPMASAADFVVGVEKVNAALRVPWFVGMRVRMSVEIEGSSRTRVfQGTVSEITAQDQDRWSLSPWRVLQ 352
                     5789***********************************************9999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-26117222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-33118222IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-18119220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.252119221IPR003340B3 DNA binding domain
CDDcd100173.80E-20119219No hitNo description
SMARTSM010198.0E-17119221IPR003340B3 DNA binding domain
PfamPF065072.7E-23274352IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MAMNASTELP VVDPQVWHAC AGTAAKLPPV GSLVYYFPQG HAEQAPSLPD FPTVSAAGGR  60
LPSHFLCRAA AIGFHAEPDT DEVFARIVLE PCSTPPPPLS PEASSSSVEE PDDGGAVVFV  120
KALTPSDANN GGGFSMPRFG AESIFPPLDM AAVPPVQNLT IRDLHGKVWT FRHIFRGVPP  180
RHLLTTGWSR FSDAKKLVAG DALVFIKKRD HQLYVGIRRA PRFSSRGPQA SLPPAAAPRD  240
KRLEVHVGAR HGFSRNDRGR VPAEVVVEAL RLGRMGRPFE VVHYPMASAA DFVVGVEKVN  300
AALRVPWFVG MRVRMSVEIE GSSRTRVFQG TVSEITAQDQ DRWSLSPWRV LQVAWDEAGV  360
LQNVHSVSPW QVDLDSATPQ MQTLNPPTRR PGILQCFDLL MDAAGRMSSP MTEKSDTIMA  420
STAPSLLSYD MFPAGMQGAR HNSVSIPNFP SFAPSNTHNL YLDNQFSNDV QQKTTEVSKE  480
LNVASTSQSE SSSPLSQGSI HFQGMELPAS AVRNPNEEDI SPPFKLFGQI IHIVQPPDAD  540
KRYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-78438043395Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930928.10.0auxin response factor 18-like
TrEMBLA0A3Q0HUE60.0A0A3Q0HUE6_PHODC; Auxin response factor
STRINGXP_008781650.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-111auxin response factor 16