PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931095.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Protein Properties

Length: 253aa MW: 28721.2 Da PI: 7.687

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931095.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	107.9	4.7e-34	41	143	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k ltpsdv+k++rlv+pk++ae+h g + e++ l++edesg+sW+++++y+ +s++yvltkGW++Fvk+++L++gD+v+F++ + + + XP_010931095.1 41 FEKPLTPSDVGKLNRLVIPKQHAEKHfpldGDSGEKGLLLSFEDESGKSWRFRYSYWTSSQSYVLTKGWSRFVKEKQLDTGDVVLFERLRAGGDR 135 99*************************9666668889**********************************************99888888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++ +r+ XP_010931095.1 136 LYIGCRRR 143 99999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.8E-43	31	148	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.1E-32	39	143	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.28E-30	40	142	No hit	No description
SMART	SM01019	6.5E-27	41	144	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.5E-31	41	143	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	15.242	41	144	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080113	Biological Process	regulation of seed growth
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MPINPVRYHP PRAWSWEPPM NPHHHYQVEQ EEAQYERELM FEKPLTPSDV GKLNRLVIPK 60 QHAEKHFPLD GDSGEKGLLL SFEDESGKSW RFRYSYWTSS QSYVLTKGWS RFVKEKQLDT 120 GDVVLFERLR AGGDRLYIGC RRRGAPQATP ARTVARPNSA LPWTMYHTPV ASPYLYVSST 180 QQDCVLHAGS FGDQEEEAVE KAHAPSPAPA NSKRLRLFGV NLDCGPERPE PQPVQPTSWF 240 MGRGSSDASS SQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-49	36	143	3	113	B3 domain-containing transcription factor NGA1
5os9_B	2e-49	36	143	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931095.1	0.0	B3 domain-containing protein Os11g0156000 isoform X1
Swissprot	Q53QI0	4e-63	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A2H3YJI6	1e-153	A0A2H3YJI6_PHODC; B3 domain-containing protein Os11g0156000-like
STRING	XP_008799673.1	1e-153	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11580.1	5e-64	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]