PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931110.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 240aa MW: 27066.8 Da PI: 5.4442

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931110.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144	8.2e-45	4	134	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Pt+eel+++yL++k+e+++ ++e+vi+ vd+y+++P +Lp + + + + ++w+fF++r++++a+g ++ r+t sgyWkatg+ XP_010931110.1 4 LPPGFRFYPTEEELLNFYLRNKIENTRQDMERVIPAVDVYSYDPVQLPpMsgeA-SIqDPEQWFFFCPRQEREAQGGKPARTTPSGYWKATGSPS 97 79**************************99***********9644532.2224569***************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s++++ +g+kkt+vfy+grap g+kt+W m+ey+ XP_010931110.1 98 YVFSSRNQRIGVKKTMVFYTGRAPYGTKTKWKMNEYK 134 **********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-48	2	162	IPR003441	NAC domain
PROSITE profile	PS51005	48.548	4	162	IPR003441	NAC domain
Pfam	PF02365	6.9E-25	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSDLPPGFRF YPTEEELLNF YLRNKIENTR QDMERVIPAV DVYSYDPVQL PPMSGEASIQ 60 DPEQWFFFCP RQEREAQGGK PARTTPSGYW KATGSPSYVF SSRNQRIGVK KTMVFYTGRA 120 PYGTKTKWKM NEYKAFEEAS SSTSSTPPRL RNEFSVCRVY IKSGTLRSFD RRPSAAVAMN 180 TDQSQRNPEA SSSSANPHVQ ADGTSSQGSS SSGDDGSQPL AADGTFDWNE YINSEPFFWE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-36	4	162	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-36	4	162	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-36	4	162	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-36	4	162	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-36	4	162	20	168	NAC domain-containing protein 19
3swm_B	2e-36	4	162	20	168	NAC domain-containing protein 19
3swm_C	2e-36	4	162	20	168	NAC domain-containing protein 19
3swm_D	2e-36	4	162	20	168	NAC domain-containing protein 19
3swp_A	2e-36	4	162	20	168	NAC domain-containing protein 19
3swp_B	2e-36	4	162	20	168	NAC domain-containing protein 19
3swp_C	2e-36	4	162	20	168	NAC domain-containing protein 19
3swp_D	2e-36	4	162	20	168	NAC domain-containing protein 19
4dul_A	1e-36	4	162	17	165	NAC domain-containing protein 19
4dul_B	1e-36	4	162	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931110.1	1e-179	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-73	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2H3WZR8	1e-147	A0A2H3WZR8_PHODC; NAC domain-containing protein 90-like
STRING	XP_008776160.1	1e-148	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	5e-74	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]