PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931246.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 514aa    MW: 58845.1 Da    PI: 7.0751
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931246.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.82e-32112168258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     dDg++WrKYGqK++k++++prsYYrCt ++C++kk+vers+edp++++itYeg H h
  XP_010931246.1 112 DDGFRWRKYGQKSIKNNPNPRSYYRCTDPRCNAKKQVERSTEDPEMLIITYEGLHLH 168
                     8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.461106171IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-30106169IPR003657WRKY domain
SuperFamilySSF1182902.62E-26110169IPR003657WRKY domain
SMARTSM007741.6E-36111170IPR003657WRKY domain
PfamPF031064.1E-26112168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MEKVFESEGT WSDGSMRELI HGVLHEESPH LFVPPEAKEA KHVACQKSVI DKLISSVYSG  60
PTIGDIESAL SMSYQHGPCG SQVLFSFPEI GSGKMKKKYT LRIKSRGNEL NDDGFRWRKY  120
GQKSIKNNPN PRSYYRCTDP RCNAKKQVER STEDPEMLII TYEGLHLHYA YSNFFLSRSK  180
GNSATSLHVP KKPKVQPKSP DARPPEPEAS TTQQQQQQQL VIACEKSPQL RLLVDALPNP  240
VVGEQSIQRE LLQDNVQCPQ GLLEDIVPLL QPRSKNQQPK DTAQVLWILD AVVSGIRGDG  300
ERAWAMLESL TGEGRSVGFK VEMGGARAHH LDLVRTDVGG GGELIQWFLE VAELSEKEEY  360
LIVRFMEARE RDVVLDRSWV VAGQMLAVEP RWLWFCPIER AICSALIRYA AYIAERYDDD  420
LSSQLPLTLR DGSVPLRGAP FRFKKFWTFY PRSWDIIKEV WRMSVYDDAR CQVTRRLELA  480
RYRLIRWNHL EVGDIFRWIE GVEADIVELQ RKED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-211091681574Probable WRKY transcription factor 4
2lex_A4e-211091681574Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019708828.10.0probable WRKY transcription factor 49 isoform X1
TrEMBLA0A2H3X2971e-138A0A2H3X297_PHODC; probable WRKY transcription factor 49
STRINGXP_008777211.11e-139(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-37WRKY DNA-binding protein 49