PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931268.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 203aa    MW: 23129.6 Da    PI: 10.1708
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931268.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-1862108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ede l +av+ + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   XP_010931268.1  62 KGGWTPQEDETLRKAVETYKGRCWKKIAEFFP-DRTEVQCLHRWQKVL 108
                      688*****************************.************986 PP
2Myb_DNA-binding63.44.4e-20114160148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT eEde+++++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
   XP_010931268.1 114 KGPWTLEEDEKIINLVQKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 160
                      79******************************.*************97 PP
3Myb_DNA-binding35.71.9e-11166198135
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 
                      +++WT eE++ l +a++++G++ W+ Ia+ ++ gR
   XP_010931268.1 166 KDAWTVEEELTLMNAHRMHGNK-WAEIAKLLP-GR 198
                      689*******************.*********.98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.67857108IPR017930Myb domain
SuperFamilySSF466896.46E-1658114IPR009057Homeodomain-like
SMARTSM007179.6E-1661110IPR001005SANT/Myb domain
PfamPF002491.3E-1662108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2364116IPR009057Homeodomain-like
CDDcd001674.12E-1365108No hitNo description
PROSITE profilePS5129430.901109164IPR017930Myb domain
SuperFamilySSF466893.17E-28111198IPR009057Homeodomain-like
SMARTSM007173.0E-18113162IPR001005SANT/Myb domain
PfamPF002494.1E-19114160IPR001005SANT/Myb domain
CDDcd001673.68E-15116160No hitNo description
Gene3DG3DSA:1.10.10.601.6E-27117164IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-13165198IPR009057Homeodomain-like
PROSITE profilePS5129412.665165203IPR017930Myb domain
SMARTSM007170.81165202IPR001005SANT/Myb domain
PfamPF002493.0E-10166198IPR001005SANT/Myb domain
CDDcd001679.47E-6168198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEVMAAVKIE QSCIENKQSA AASSSSLSEG SYGFSRMSPA VSSPATSSPS HRRTSGPIRR  60
AKGGWTPQED ETLRKAVETY KGRCWKKIAE FFPDRTEVQC LHRWQKVLNP ELIKGPWTLE  120
EDEKIINLVQ KYGPTKWSVI AKSLPGRIGK QCRERWHNHL NPLIKKDAWT VEEELTLMNA  180
HRMHGNKWAE IAKLLPGRFI VLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-64611985142MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-64611985142MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931265.11e-136transcription factor MYB3R-3 isoform X1
RefseqXP_010931266.11e-136transcription factor MYB3R-3 isoform X1
SwissprotQ8H1P91e-111MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A2H3YRH41e-135A0A2H3YRH4_PHODC; transcription factor MYB3R-3
STRINGXP_008802730.11e-135(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.11e-95myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]