PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931316.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 530aa    MW: 57577.4 Da    PI: 6.7443
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931316.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1047.9e-33232290160
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     ldDgynWrKYGqK+vkgse+prsYY+Ct+++Cp +kk+ers  d++++ei+Y+g Hnh+k
  XP_010931316.1 232 LDDGYNWRKYGQKPVKGSENPRSYYKCTFPNCPKRKKLERSL-DGQITEIVYKGAHNHPK 290
                     59****************************************.***************85 PP
2WRKY1054e-33396454159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+
  XP_010931316.1 396 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDLRAVITTYEGKHNHD 454
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-29220291IPR003657WRKY domain
SuperFamilySSF1182902.88E-25226291IPR003657WRKY domain
PROSITE profilePS5081124.65227291IPR003657WRKY domain
SMARTSM007745.6E-35232290IPR003657WRKY domain
PfamPF031065.4E-24233289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-37381456IPR003657WRKY domain
SuperFamilySSF1182904.32E-29388456IPR003657WRKY domain
PROSITE profilePS5081138.411391456IPR003657WRKY domain
SMARTSM007742.1E-38396455IPR003657WRKY domain
PfamPF031062.4E-25397454IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MTSPTGSLET SSNSWPAAAF SFPTTSFSEL LSGAGNDGED WLMTTATWGL SDNMGNGGAG  60
GPKFKSMTPP SLPISPAPIS PSSYFAILPS LSPTEFLDSS VLLSSNILQS PTIGTSPAQM  120
FDWRGPAASY QQGIKEENKG YSELSFQTQA SNGAVQTTSF HPSSMPISSD QKSWNYQQES  180
NNANVKAELV PPSRANSSGI LHANAQVDTG EQQSYFSHST QAAQTLREQR TLDDGYNWRK  240
YGQKPVKGSE NPRSYYKCTF PNCPKRKKLE RSLDGQITEI VYKGAHNHPK PPSTRRNSAS  300
SQAFPASGAA EASDHSFGAQ PGTLIDSVPT PENSSVSFGD DNLDASKLGA DEFDEDEPDA  360
KLRRKDGEND GISALGNRTV REPRVVVQTT SDVDILDDGY RWRKYGQKVV KGNPNPRSYY  420
KCTTVGCPVR KHVERASHDL RAVITTYEGK HNHDVPAARG IGVRRPPTED DNSKNNFTMA  480
IRPTAMVNHP NQMMTNSLFS SRPSASVSQA PLTLEMLQTP GSYGFSGFDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-37217457278Probable WRKY transcription factor 4
2lex_A7e-37217457278Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931316.30.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-146WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2H3Y1T60.0A0A2H3Y1T6_PHODC; WRKY transcription factor WRKY24
STRINGXP_008792187.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-109WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]